Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c05r
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical... 115 5e-26
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 34 0.16
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 32 0.63
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 31 0.83
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 31 0.83
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 31 0.83
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 31 0.83
AL117204-4|CAB55144.1| 281|Caenorhabditis elegans Hypothetical ... 31 1.5
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 31 1.5
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 30 2.5
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 3.4
U41017-6|AAC48215.1| 399|Caenorhabditis elegans C.elegans homeo... 29 3.4
U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF039713-10|AAB96721.1| 691|Caenorhabditis elegans Hypothetical... 29 5.9
AF003150-4|AAB54217.1| 381|Caenorhabditis elegans Hypothetical ... 29 5.9
Z81525-7|CAE17780.1| 263|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 28 7.8
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 28 7.8
>CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical
protein C42C1.15 protein.
Length = 312
Score = 115 bits (276), Expect = 5e-26
Identities = 54/114 (47%), Positives = 83/114 (72%)
Frame = -2
Query: 633 QVVEKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEA 454
+VVEK AET R+KA+IEAEK A VA I ++ + EKE+ + + +E + A +++KA+A
Sbjct: 199 KVVEKLAETERKKAVIEAEKAAQVALIHQKRLLSEKETEKLLNQMEAESNLASERSKADA 258
Query: 453 DFYHLKKQAEANKLLLTREYLELKKYEALSNNNKIYFGSDIPNMFLQANVGESV 292
+FY +KQA++NK+LLT+EYLEL+K A+++NNKIY+G IP F+ ++V
Sbjct: 259 EFYKAQKQADSNKILLTKEYLELQKIRAIASNNKIYYGDSIPQAFVMGTTQQTV 312
Score = 89.4 bits (212), Expect = 3e-18
Identities = 43/65 (66%), Positives = 53/65 (81%)
Frame = -3
Query: 887 DENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKLLIAAQHQKVIV 708
DE ++ ALQ+DL +MAPGL VQAVRVTKPKIPE+IR NYE MEAEK+KLL+A + QKV+
Sbjct: 143 DEEIKNALQEDLVKMAPGLYVQAVRVTKPKIPEAIRLNYEKMEAEKTKLLVAQETQKVVE 202
Query: 707 LILNT 693
+ T
Sbjct: 203 KLAET 207
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -2
Query: 630 VVEKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAK-QQTKAEA 454
+VEKEA + I E + ++YE +++ K ++ +E +E + K QQ E
Sbjct: 375 LVEKEARFSEEMERIRTESQTTSESLKYEHELVRKMMIEDMEKLEAEVLALKSQQANLEI 434
Query: 453 DFYHLK-KQAE 424
+H K KQ E
Sbjct: 435 QEFHDKIKQLE 445
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 31.9 bits (69), Expect = 0.63
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = -2
Query: 633 QVVEKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESL-QKIELIEDSIHKAKQQTKAE 457
+V +E E +R+ + E EK+ + E+K +EK+ L ++ L ++ K + K E
Sbjct: 86 KVSREEREKQKREKMEEREKQRIERERILEEKRLEKDKLAEEKRLDKEKKEKERLDKKLE 145
Query: 456 ADFYHLKKQAEANKLLLTREYLELKKYEALSNNNK 352
D +K+ EA + E ++KK E + K
Sbjct: 146 EDKKKEEKRKEAEEKKKKDEEEKMKKDEERNKRKK 180
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = -2
Query: 636 LQVVEKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSI-HKAKQQTKA 460
+++ E+EAE ARR+A +E E+ K + E+K ME+ ++ L + + + +Q+ KA
Sbjct: 353 IRLAEEEAELARRRA-LEKER-IDREKAEEERKTMERLERERARLERERLEEERRQKEKA 410
Query: 459 EAD 451
E +
Sbjct: 411 ETE 413
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = -2
Query: 636 LQVVEKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSI-HKAKQQTKA 460
+++ E+EAE ARR+A +E E+ K + E+K ME+ ++ L + + + +Q+ KA
Sbjct: 353 IRLAEEEAELARRRA-LEKER-IDREKAEEERKTMERLERERARLERERLEEERRQKEKA 410
Query: 459 EAD 451
E +
Sbjct: 411 ETE 413
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = -2
Query: 636 LQVVEKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSI-HKAKQQTKA 460
+++ E+EAE ARR+A +E E+ K + E+K ME+ ++ L + + + +Q+ KA
Sbjct: 353 IRLAEEEAELARRRA-LEKER-IDREKAEEERKTMERLERERARLERERLEEERRQKEKA 410
Query: 459 EAD 451
E +
Sbjct: 411 ETE 413
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = -2
Query: 636 LQVVEKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSI-HKAKQQTKA 460
+++ E+EAE ARR+A +E E+ K + E+K ME+ ++ L + + + +Q+ KA
Sbjct: 353 IRLAEEEAELARRRA-LEKER-IDREKAEEERKTMERLERERARLERERLEEERRQKEKA 410
Query: 459 EAD 451
E +
Sbjct: 411 ETE 413
>AL117204-4|CAB55144.1| 281|Caenorhabditis elegans Hypothetical
protein Y116A8C.11 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = -2
Query: 573 EAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREY 394
+ +A ++ + K + + L E++I++ T +E LKKQ +A+K+ L E
Sbjct: 56 KTRIASLEKDVKQEKNATKMAKSLNEETINEL---TLSEDLIESLKKQFQASKIELKEEI 112
Query: 393 LELKKYEALSNNNKIYF 343
L K E +N+K YF
Sbjct: 113 LSKNKVEKDYSNDKRYF 129
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = -2
Query: 621 KEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEADFYH 442
K+ R K I + ++ K+Q E++ M++++ ++ +LI D K K + +
Sbjct: 227 KQQNQEREKQINDDFEKRKQEKLQREEE-MKQQNQEREKLIADDFEKRKLEKLQREKLFE 285
Query: 441 LKKQAEANKLLLTREYLELKKYEALSNNN 355
KQA+ + +E E +K E L N
Sbjct: 286 KNKQAKLQREKAHQE-SERRKLEKLKREN 313
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = -2
Query: 633 QVVEKEAETARRKAIIE-AEKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAE 457
Q EKE E A R+ I E AE +A + E++ EKE ++ + + + K K++++ +
Sbjct: 157 QQKEKEREDAARREIEEKAEMDAKRVAEEEEERRKEKEKRREEKKKQKELLKEKERSERK 216
Query: 456 ADFYHLKKQAEANK 415
L+++ E ++
Sbjct: 217 EKERELEREKEKSR 230
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/58 (20%), Positives = 31/58 (53%)
Frame = -2
Query: 624 EKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEAD 451
E+E E + K ++ E+ +H A+ + E K +E + ++++D++ + + + D
Sbjct: 668 ERETEIKKLKQRMDEERASHTAQSEQEMKQLEAHYERAQKMLQDNVEQMNVENRGLRD 725
>U41017-6|AAC48215.1| 399|Caenorhabditis elegans C.elegans homeobox
protein 39 protein.
Length = 399
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -3
Query: 512 KLNSLKTVFT---RPNNRQRQKLTFTISKNRLKPINFF 408
+L+SL TVF RPN +Q L+ T+ NR NFF
Sbjct: 328 QLDSLHTVFQQQDRPNREMQQALSATLKLNRSTVGNFF 365
>U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical
protein ZK430.8 protein.
Length = 724
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 530 RRNLYRKLNSLKTVFTRPNNRQRQKLT 450
R NL+ L+SL +F R +NR QKLT
Sbjct: 396 RANLFIGLSSLHIMFAREHNRIAQKLT 422
>AF039713-10|AAB96721.1| 691|Caenorhabditis elegans Hypothetical
protein F57B10.4 protein.
Length = 691
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = -2
Query: 636 LQVVEKEAETARRKAIIEAEKEAHVAKIQYEQKIMEKESLQKIELIEDS-IHKAKQQTKA 460
LQ +EK +E ++II E A + I+Y+ K + K S +I +E++ I K + T+
Sbjct: 281 LQTLEK-SEAENSESIINLE--ASLEDIKYQNKKVRK-SFDQINQLENAYIVKKEVLTRK 336
Query: 459 EADFYHLKKQAEANKLLLTREYLELKKYE 373
++ +K+Q +K+ L + + ++ E
Sbjct: 337 KSAIEDVKRQIAESKITLNKLKVTVRAVE 365
>AF003150-4|AAB54217.1| 381|Caenorhabditis elegans Hypothetical
protein T05E7.5 protein.
Length = 381
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -2
Query: 546 EQKI--MEKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYLELKK 379
E+K+ + E + +E +++ +H+ +A +FY KK NK+ L ++ +ELK+
Sbjct: 135 EKKVEDLNGEHQKSLEKLKERLHEKDAFIEACEEFYDEKK-INVNKMTLMKQEMELKR 191
>Z81525-7|CAE17780.1| 263|Caenorhabditis elegans Hypothetical
protein F33A8.10 protein.
Length = 263
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 12/62 (19%)
Frame = -2
Query: 630 VVEKEAETARR---KAIIEAEKEA-----HVAKIQYEQKIMEKESLQKIELI----EDSI 487
V++K+ E RR +A+ + KEA V +I ++ EKE L+KIE I DSI
Sbjct: 192 VIDKDLEDKRRNVDRAVSQMSKEAVEEFQRVVRIMHDPSQPEKEKLKKIEEIYSKLPDSI 251
Query: 486 HK 481
K
Sbjct: 252 RK 253
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -3
Query: 575 KRPM*QKYNMNKKSWRRNLYRKLNSLKTVFTRPNNRQRQKLTFTISKNRLKPINF 411
K+P ++N N+K L + NNR+ ++T TI KN K +NF
Sbjct: 419 KQPTEGRWNPNQKIEINGQGESLKTSIETVVLGNNRKSLEITATIPKNNNKLLNF 473
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -2
Query: 618 EAETARRKAIIEAEKEAHVAKIQYEQ-KIMEKESLQK--IELIEDSIHKAKQQTKAEADF 448
EAE A A E+E + YEQ +++EKE +++ EL E + ++ + E F
Sbjct: 71 EAEAAMLAAKKRHEEEEAAKLLDYEQRRVLEKEQMEQELRELKEKQEKRRAEREEDERQF 130
Query: 447 YHLKKQAEANK 415
++Q E +
Sbjct: 131 AERRRQDEERR 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,845,513
Number of Sequences: 27780
Number of extensions: 386445
Number of successful extensions: 1225
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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