Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c05r
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   2.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   8.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 836 GLRVQAVRVTKPKIPESIRKNYELMEAEKSKL 741
           GLR +  +  KPK+  +IR+   ++     K+
Sbjct: 427 GLRYRGPKQNKPKVLHAIRRGASILRVSMPKI 458


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 545 SYCIFATWASFSASIIALRLAVS 613
           S+C+  T+ASF   I+ +++AV+
Sbjct: 77  SHCMTITFASFLLFILLVQIAVA 99


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 335 IYPTCSYKQML 303
           + PTC+YKQ++
Sbjct: 262 LLPTCAYKQLI 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,277
Number of Sequences: 438
Number of extensions: 5390
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)