Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c05f
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...   210   9e-55
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333...    29   3.2  
11_06_0595 - 25368114-25370051                                         29   4.2  
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197...    29   4.2  
08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505     29   4.2  
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141...    29   4.2  
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241...    29   5.5  
05_04_0214 - 19111493-19112413,19112674-19112750,19113843-191144...    29   5.5  

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score =  210 bits (513), Expect = 9e-55
 Identities = 93/170 (54%), Positives = 130/170 (76%)
 Frame = +3

Query: 210 LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGV 389
           LH+V EGHVGVY+RGGALL   +  GFH+ +P +T ++ IQ       V+N+PCGT GGV
Sbjct: 157 LHQVPEGHVGVYWRGGALLETITPPGFHVKLPWITQFEPIQ-------VRNIPCGTKGGV 209

Query: 390 LIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFD 569
           +I F++IEVVN+L  + V + + N+   YD+T I++K+HHE+NQFCSAH+L +VYIDLFD
Sbjct: 210 MISFDKIEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAHSLQQVYIDLFD 269

Query: 570 QIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSK 719
           QIDE ++ A+Q+D    APG+ + +VRVTKP IP+SIR+N+ELME E++K
Sbjct: 270 QIDETMKEAIQRDCTRYAPGIEIISVRVTKPNIPDSIRRNFELMEEERTK 319


>12_02_0723 -
           22532379-22532902,22533060-22533135,22533195-22533380,
           22533459-22534323,22534740-22534918,22535168-22535542
          Length = 734

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 492 FNKVHHELNQFCSAHTLHEVYIDLFDQIDENLR 590
           F KV +  N+F + H +H V  D+ DQ+ + L+
Sbjct: 96  FKKVTNLFNKFKTNHQIHGVMKDIMDQVKKELK 128


>11_06_0595 - 25368114-25370051
          Length = 645

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 548 LVQGMGTTELIQFMVHFIENKSPV 477
           + +G GT E+I+F V FIE+  P+
Sbjct: 327 IAKGYGTEEVIEFCVEFIEDLRPI 350


>11_04_0166 +
           14317129-14317962,14318042-14318809,14319008-14319740,
           14353399-14353892,14353971-14354417,14354505-14355110,
           14355204-14355391,14355470-14355640,14355723-14355810
          Length = 1442

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 548 LVQGMGTTELIQFMVHFIENKSPV 477
           + +G GT E+I+F V FIE+  P+
Sbjct: 614 IAKGYGTEEVIEFCVEFIEDLRPI 637


>08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505
          Length = 772

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 548 LVQGMGTTELIQFMVHFIENKSPV 477
           + +G GT E+I+F V FIE+  P+
Sbjct: 713 IAKGYGTEEVIEFCVEFIEDLRPI 736


>04_01_0129 +
           1408408-1409055,1409107-1410013,1410145-1410294,
           1419174-1419634,1419683-1419999,1420114-1420477
          Length = 948

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 548 LVQGMGTTELIQFMVHFIENKSPV 477
           + +G GT E+I+F V FIE+  P+
Sbjct: 675 IAKGYGTEEVIEFCVEFIEDLRPI 698


>07_03_0375 +
           17408815-17409035,17422820-17423477,17423780-17424161,
           17424236-17424550,17424727-17425118,17432479-17432508
          Length = 665

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 548 LVQGMGTTELIQFMVHFIENKSPV 477
           + +G GT E+I+F + FIE+  P+
Sbjct: 632 IAKGCGTEEVIEFCIEFIEDLRPI 655


>05_04_0214 -
           19111493-19112413,19112674-19112750,19113843-19114412,
           19114605-19114754,19115499-19115643
          Length = 620

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +3

Query: 630 LRVQAVRVTKPKIPESIRKNYELMEAEKSK-----TTYCSPTSESNCVDLEY 770
           + +  + VTK ++   ++K    +E E+ K     ++ C+P S +NC+D  Y
Sbjct: 297 MELDGIFVTKTQVSSHLQKYRSWLENERKKEEATSSSPCNPLSYTNCLDRGY 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,030,952
Number of Sequences: 37544
Number of extensions: 374910
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)