Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c05f
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...   272   2e-73
U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protei...    39   0.004
U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protei...    39   0.004
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   1.2  
Z73427-6|CAA97798.2|  410|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U80836-9|AAB37895.1|  303|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF000262-7|AAN60523.1|  544|Caenorhabditis elegans Hypothetical ...    28   6.6  

>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score =  272 bits (667), Expect = 2e-73
 Identities = 128/195 (65%), Positives = 154/195 (78%), Gaps = 1/195 (0%)
 Frame = +3

Query: 165 LAIVILAVGVTVHF-SLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTL 341
           LA+ + A+ + +   +LHK+EEGHVGVYYRGGALL   +  G+HM IP LT+ K++Q TL
Sbjct: 5   LALGLFALWIAIFSQALHKIEEGHVGVYYRGGALLKAVTNPGYHMHIPFLTTVKSVQVTL 64

Query: 342 QTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQ 521
           QTDE  NVPCGTSGGVLIYF+RIEVVN L   SV  +V+N+T +YDR LIFNKVHHE+NQ
Sbjct: 65  QTDEATNVPCGTSGGVLIYFDRIEVVNFLSQDSVYAIVKNYTVDYDRPLIFNKVHHEVNQ 124

Query: 522 FCSAHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELM 701
           FCS HTL EVYIDLFD+IDE ++ ALQ+DL +MAPGL VQAVRVTKPKIPE+IR NYE M
Sbjct: 125 FCSVHTLQEVYIDLFDKIDEEIKNALQEDLVKMAPGLYVQAVRVTKPKIPEAIRLNYEKM 184

Query: 702 EAEKSKTTYCSPTSE 746
           EAEK+K      T +
Sbjct: 185 EAEKTKLLVAQETQK 199


>U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protein
           1, isoform a protein.
          Length = 330

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 35/172 (20%), Positives = 74/172 (43%)
 Frame = +3

Query: 171 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 350
           ++ L   V+V   +  V+E    V +R G L+P     G   +IP + ++  I   + + 
Sbjct: 51  LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110

Query: 351 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCS 530
            V +    +   V +  + +      DP + +  V N T   D T +  +    L     
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT---DSTKLLAQT--TLRTILG 165

Query: 531 AHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRK 686
            HTL E+  D  ++I  +++ +L +       G++V+ V +   ++P  +++
Sbjct: 166 THTLSEILSDR-EKISADMKISLDEATEPW--GIKVERVELRDVRLPSQMQR 214


>U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protein
           1, isoform b protein.
          Length = 325

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 35/172 (20%), Positives = 74/172 (43%)
 Frame = +3

Query: 171 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 350
           ++ L   V+V   +  V+E    V +R G L+P     G   +IP + ++  I   + + 
Sbjct: 51  LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110

Query: 351 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCS 530
            V +    +   V +  + +      DP + +  V N T   D T +  +    L     
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT---DSTKLLAQT--TLRTILG 165

Query: 531 AHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRK 686
            HTL E+  D  ++I  +++ +L +       G++V+ V +   ++P  +++
Sbjct: 166 THTLSEILSDR-EKISADMKISLDEATEPW--GIKVERVELRDVRLPSQMQR 214


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +3

Query: 429 DPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLRTALQKD 608
           DP  +  ++R F ++Y+R   F+    +L  F  A T H+V  D    I ++  TA ++ 
Sbjct: 43  DPSDMFVIIRFFVSDYERFRKFDMGPTKLASF-MAKTFHDVRADYVSTISKDASTAARQL 101

Query: 609 LHEMAPGLRVQ 641
             +++   R +
Sbjct: 102 AEKISEEYRTE 112


>Z73427-6|CAA97798.2|  410|Caenorhabditis elegans Hypothetical
           protein F58B3.6 protein.
          Length = 410

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 558 DLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKTTYCSP 737
           D++DQ+ +NL  A  K+      GL    + +T    PE I +N E + A  S+     P
Sbjct: 53  DVYDQLVDNLDRAQDKNSTTRIDGLHRVNLALTAKPAPEFINRNKETIMAVCSRMAN-KP 111

Query: 738 TSES 749
            SE+
Sbjct: 112 DSEA 115


>U80836-9|AAB37895.1|  303|Caenorhabditis elegans Hypothetical
           protein B0432.10 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 402 ERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDE 581
           +++ + N+     +++++   TA+YD  ++     H L Q    + +H+    L   I+E
Sbjct: 164 QQLSLANETMENRMIEVLMEATAKYDDIVVIRHSFHRLIQLAQTYRMHK----LMRVIEE 219

Query: 582 NL 587
           NL
Sbjct: 220 NL 221


>AF000262-7|AAN60523.1|  544|Caenorhabditis elegans Hypothetical
           protein C48E7.2 protein.
          Length = 544

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
 Frame = +3

Query: 411 EVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYID-------LFD 569
           E V KL   S  +      A  +   +FNK     N F  A T +  Y+D       L +
Sbjct: 384 EQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLYYVDLPRTIRGLVE 443

Query: 570 QIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEK 713
              + +R  + +  HE      V         I E+IR + +L EA K
Sbjct: 444 YTCKLVRNLIVRQRHERTENKSVLDKDANVQPIIENIRSSEQLDEASK 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,318,919
Number of Sequences: 27780
Number of extensions: 361857
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)