Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c04r
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 61 1e-09
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 59 4e-09
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 50 2e-06
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 38 0.006
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 38 0.006
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 30 2.2
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 5.0
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 5.0
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 5.0
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 5.0
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 8.7
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 8.7
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 8.7
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 60.9 bits (141), Expect = 1e-09
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 6/207 (2%)
Frame = -1
Query: 622 CGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTL 443
CG SL+ +TAAHC+ R + +++ +G SG T+ V +H YN+
Sbjct: 84 CGGSLIDPNFVLTAAHCFAKDR-RPTSYSVRVGGHRSGSGSPHRVTA-VSIHPWYNIGFP 141
Query: 442 HN-DVAIIN-HNHVGFTNNIQRINLASGSNNXXXXXXXXXXXGRTSDAASGANNQQKRQV 269
+ D AI+ H V + + I L S ++ S + R++
Sbjct: 142 SSYDFAIMRIHPPVNTSTTARPICLPSLP--AVENRLCVVTGWGSTIEGSSLSAPTLREI 199
Query: 268 SLQVITNAVCAR--TFGNNVIIASTLCVDGSNGR-STCSGDSGGPLTIGSGGSRQLIGIT 98
+ +++ C+ + + + S LC S G+ +C GDSGGPL G +L G+
Sbjct: 200 HVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVV 259
Query: 97 SFGSAQGCQR-GHPAGFARVTSFNSWI 20
S+G GC R G P + V S ++WI
Sbjct: 260 SWGI--GCARPGMPGVYGNVHSASTWI 284
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 58.8 bits (136), Expect = 4e-09
Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 17/228 (7%)
Frame = -1
Query: 640 NGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGS 461
NG+ +CGA+++ + VTAAHC + Q R F N + + +H
Sbjct: 60 NGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHSG 115
Query: 460 YNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN-------NXXXXXXXXXXXGRTSDAA 302
YN T ND+A++ + I+ + L + N +S
Sbjct: 116 YNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEP 175
Query: 301 SGANNQQKRQVSLQVITNAVCARTFGN----NVIIASTLCVDGSNGRSTCSGDSGGPLTI 134
N+Q + S+ +I++ C +T+ +V I G+ T GDSGGPL I
Sbjct: 176 KLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHGTAPGDSGGPLLI 235
Query: 133 -GSGGSRQLIGITSFGSAQGC-----QRGHPAGFARVTSFNSWIRARI 8
S G IGITS+G A G Q P + R++ + WI+ I
Sbjct: 236 HKSNGEYVQIGITSYG-ADGLDGVIDQGKFPGVYTRISKYVPWIQGVI 282
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 50.0 bits (114), Expect = 2e-06
Identities = 57/223 (25%), Positives = 88/223 (39%), Gaps = 9/223 (4%)
Frame = -1
Query: 649 ALTNGRTSI--CGASLLTNTRSVTAAHCWRT-RRAQARQFTLALGTANIFSGGTRVT-TS 482
AL N T CGAS+L T +TAAHC+ R + + + N G ++
Sbjct: 43 ALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQ 102
Query: 481 NVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSNNXXXXXXXXXXXGRTSDAA 302
+ + Y D +D+AI+ + G N + S + + +
Sbjct: 103 RIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVV--SGWGS 159
Query: 301 SGANNQQKRQVSLQVITNAV-CARTFG-NNVIIASTLCVDG-SNGRSTCSGDSGGPLTI- 134
G ++ Q +L I N C + + + S C G +C GDSGGP
Sbjct: 160 MGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYLEGGIDSCQGDSGGPFACR 219
Query: 133 GSGGSRQLIGITSFGSAQGC-QRGHPAGFARVTSFNSWIRARI 8
G+ L G+ S+G GC Q+ P + V + SWI A I
Sbjct: 220 REDGAFVLAGVISWG--DGCAQKKQPGIYTMVAPYLSWISAII 260
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -1
Query: 223 NNVIIASTLCVDGSNGRSTCSGDSGGPLTI--GSGGSRQLIGITSFGSAQGCQRGHPAGF 50
++ I A+++ V + TC GDSGG L + G LI ITSFG+ +GC A F
Sbjct: 216 DDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSFGT-RGCPSNMLARF 274
Query: 49 ARVTSF 32
RV +
Sbjct: 275 TRVDMY 280
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 271 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQ--LIGIT 98
++L T A C +G ++ S C ++ CSGDSGG LT S + +I I
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIV 294
Query: 97 SFGS 86
S+GS
Sbjct: 295 SYGS 298
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -1
Query: 313 SDAASGANNQQKRQVSLQVITNAVCARTFGNNVI---IASTLCVDGSNGRSTCSGDSGGP 143
+ AA+G NN S +V + A+ FG + I + GS G G SGG
Sbjct: 419 TSAANGGNNAGGGGSSAEVRSVGFGAQQFGGSQFARPIPAGGGGGGSGGYGAGGGGSGGY 478
Query: 142 LTIGSGGSRQLIGITSFGSA 83
G+GG+R S+GS+
Sbjct: 479 GAGGAGGARNSASNGSYGSS 498
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 488 GDPGASGEDVSCAKSEGELTSLGSPGPP 571
G+PGA G+D K +GE G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 640 SSVRSQVQQDGGEHQRLRQNHPQSWYRRSQRLPRRV*DSRPGGY 771
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 640 SSVRSQVQQDGGEHQRLRQNHPQSWYRRSQRLPRRV*DSRPGGY 771
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 442 HNDVAIINHNHVGFTNNIQRINLASGSNN 356
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 442 HNDVAIINHNHVGFTNNIQRINLASGSNN 356
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 442 HNDVAIINHNHVGFTNNIQRINLASGSNN 356
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = -3
Query: 407 WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGSQQP-TKTPSEPPGHYQRRL-RP 234
+L +Q PAHQ Q K+Q C C +C ++ P E + R++ R
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKCEKCAKHPHHHCKCEDQKEFNRKIVRA 589
Query: 233 HVWKQCDHC--LHP 198
K CD C HP
Sbjct: 590 LCPKTCDICNETHP 603
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 488 GDPGASGEDVSCAKSEGELTSLGSPGPP 571
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 488 GDPGASGEDVSCAKSEGELTSLGSPGPP 571
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 319 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 146
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 319 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 146
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,028
Number of Sequences: 27780
Number of extensions: 318384
Number of successful extensions: 1512
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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