Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c04r
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    45   7e-07
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.80 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   1.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 45.2 bits (102), Expect = 7e-07
 Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 12/214 (5%)
 Frame = -1

Query: 625 ICGASLLTNTRSVTAAHCWRTRRAQARQFTLALG----TANIFSGGTRVTTSN-VQMHGS 461
           ICGA++++    +TAAHC         +  + +G    ++   +  T + + N V +H  
Sbjct: 187 ICGATIISKRYVLTAAHCIIDENTT--KLAIVVGEHDWSSKTETNATVLHSINKVIIHPK 244

Query: 460 YNM----DTLHNDVAIIN-HNHVGFTNNIQRINLASGSNNXXXXXXXXXXXGRTSDAASG 296
           Y++    D   ND+A++     + F + +    L                 G    + +G
Sbjct: 245 YDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNG 304

Query: 295 ANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSR 116
             +   ++ +L ++T   C + +GN  I+ + +C   + G+  C  DSGGP+   +  ++
Sbjct: 305 MLSHILQKTTLNMLTQVECYKYYGN--IMVNAMCAY-AKGKDACQMDSGGPVLWQNPRTK 361

Query: 115 QL--IGITSFGSAQGCQRGHPAGFARVTSFNSWI 20
           +L  IGI S+G+  G    +P G  +V S+  WI
Sbjct: 362 RLVNIGIISWGAECG---KYPNGNTKVGSYIDWI 392


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 637  HSSVRSQVQQDGGEHQRLRQNHPQSWYRRSQR 732
            HSS ++Q QQ   + Q+ +Q  PQ   ++ Q+
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQ 1526



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +2

Query: 494 PGAS---GEDVSCAKSEGELTSLGSPG 565
           PG S   GE  S A ++G  T+  SPG
Sbjct: 893 PGCSSKNGEPTSAAFAQGFATAASSPG 919


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 665 CWTCDRTDEWQNFH 624
           CW CD+ +E++  H
Sbjct: 467 CWVCDQCEEYEYVH 480


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 686 VCGRTTHNPGTVEVSGFLGASKTLGPGDTDLD 781
           VCGR   N  TV  +  L    ++G GDT  D
Sbjct: 125 VCGRFYGNIQTVXNNWLLLEGHSIGIGDTIAD 156


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 404 LHQQHPAHQPSQWKQQ 357
           +H QHP  QP Q + Q
Sbjct: 172 MHTQHPHMQPQQGQHQ 187


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -3

Query: 665 CWTCDRTDEWQ 633
           CW CD+ +E++
Sbjct: 557 CWVCDQCEEYE 567


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -3

Query: 119 PSTDRYHIVRISSRL 75
           P+T+ Y+I+ +++RL
Sbjct: 116 PNTEEYYIIEVNARL 130


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 574 CWRTRRAQARQFTLALGTANI 512
           CW TR+    Q    +GT+N+
Sbjct: 459 CWDTRKEYIPQNLGVIGTSNL 479


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 297 EPTTNKNAK*ASRS 256
           EP TNKN K  SRS
Sbjct: 239 EPGTNKNGKFFSRS 252


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 463 SYNMDTLHNDVAIINHNHVGFTNN 392
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 463 SYNMDTLHNDVAIINHNHVGFTNN 392
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/49 (24%), Positives = 18/49 (36%)
 Frame = +3

Query: 105 PIS*RLPPLPMVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTAL 251
           P+S  +PP P  +  P++      P  P    +       P V   T L
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTIL 807


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,491
Number of Sequences: 438
Number of extensions: 4224
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)