Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c03r
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    53   6e-08
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    42   1e-04
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    41   2e-04
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    40   6e-04
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    39   0.001
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    38   0.001
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    33   0.071
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    31   0.16 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    30   0.38 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.5  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    28   1.5  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.7  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 23/56 (41%), Positives = 37/56 (66%)
 Frame = -3

Query: 821 RVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 654
           +VFD+D NGYIT +EL   L  +GE ++  ++  ++   D D DG I+YEEF +++
Sbjct: 92  KVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVI 147



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = -3

Query: 818 VFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 654
           +FDRD +G IT +EL   +  +G+  T A+L  ++   D D +G ID+ EF+ M+
Sbjct: 20  LFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMM 74


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 35/57 (61%)
 Frame = -3

Query: 821 RVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKMLL 651
           RVFD+D++GYI   +    ++ +GE ++D ++  ++   D  + G  DY +FV+ ++
Sbjct: 85  RVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIM 141


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 37/57 (64%)
 Frame = -3

Query: 821 RVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKMLL 651
           +VFD+D  G I   EL+  L  +GE +++ +++++L  G    DG ++Y +FV+M+L
Sbjct: 84  QVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLK-GVPVKDGMVNYHDFVQMIL 139


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 16/56 (28%), Positives = 33/56 (58%)
 Frame = -3

Query: 818 VFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKMLL 651
           +FD D+ G I+   L+   + + E + D +L  ++   D+D DG I+ +EF+ +++
Sbjct: 118 LFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIMM 173


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
 Frame = -3

Query: 821 RVFDRDDNGYITRDELQAALE-MIGEPVTDAQLNQV----LALGDIDHDGRIDYEEF 666
           +++D D +GYI+  EL   L+ M+G  + + QL Q+    +   D D DG+I +EEF
Sbjct: 100 KIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEF 156



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -3

Query: 812 DRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 654
           D + +G I R+E  +   +   P+     +++ ++ D D  G +D++EF+  L
Sbjct: 34  DANQSGSIDRNEFLSIPSVASNPLA----SRLFSVVDEDGGGDVDFQEFINSL 82


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -3

Query: 818 VFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 654
           VFD D NGYI   E   AL +      + +L     L D+D++G I Y+E ++++
Sbjct: 71  VFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIV 125



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 12/64 (18%)
 Frame = -3

Query: 821 RVFDRDDNGYITRDEL----QAALEMIG--------EPVTDAQLNQVLALGDIDHDGRID 678
           +++D D+NG I+ DE+     A  +M+G        E   + ++N++  + D + DG++ 
Sbjct: 106 QLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLT 165

Query: 677 YEEF 666
            EEF
Sbjct: 166 LEEF 169


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 818 VFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKM 657
           +FD    GYI  ++L+ +   +GE +T  QL  +L L     +G++  EEF ++
Sbjct: 20  LFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGT--NGKVSREEFAEL 71


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 803 DNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEF 666
           +NGY++  +    L      ++  +L ++  L DID DG  D++EF
Sbjct: 19  ENGYLSGSKAAGVLR--SSKLSSDKLEKIWDLADIDDDGMFDFDEF 62


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 812 DRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGD 702
           D  D GYI +DE   A+E+I   ++   L  +LA  D
Sbjct: 346 DTQDRGYIDKDEFAVAMEIIKLRLSGKSLASILAYDD 382


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 321  LNVLTLVNTISSAF--TSIYLLGASSLKIHIFIFTLFRKFYNSI-LLKINHNL 470
            LN++       + F  TS+Y L  +S K H   FTL +K  + +  LKI+  L
Sbjct: 1936 LNIVIKYRNFDNIFRETSLYTLTTTSFKTHSQAFTLLQKVVDQLDQLKIHETL 1988


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +3

Query: 225 SVFNNVTIYLLFIR**Q*ILYLGLDILQYIIYLNVLTLVNTISSAFTSIYLLGASSLKIH 404
           +V N  T   LF R  Q +L   L+ +  I+  NV++ V  ++  F     L   +LK  
Sbjct: 121 NVKNVYTTLQLFPR--QDLLAYSLNQIVEILLGNVMSSVLPVADRFQFDLTLADQNLKAE 178

Query: 405 IFIFTLFRKFYNSILLKINHNL 470
            F+F +  K    IL +I ++L
Sbjct: 179 RFVFAIVHKDCMRILREIRYDL 200


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 65   FLFIFYILKLYITYAFVICF----FSIIVILVFYLYKYKII*FRSLS 193
            F+F F  L   +    VIC+    F I+++ +F+LY+Y  + +   S
Sbjct: 1020 FMFFFRNLFQIVFVLAVICYSSPMFMILIVPLFFLYRYNQVYYTQTS 1066


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,434
Number of Sequences: 5004
Number of extensions: 60216
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)