Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17c03f
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 53 3e-08
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 42 5e-05
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 41 9e-05
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 40 3e-04
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 39 5e-04
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 38 6e-04
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 33 0.030
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 31 0.069
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 30 0.16
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 7.9
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 52.8 bits (121), Expect = 3e-08
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = +1
Query: 163 RVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 330
+VFD+D NGYIT +EL L +GE ++ ++ ++ D D DG I+YEEF +++
Sbjct: 92 KVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVI 147
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 166 VFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 330
+FDRD +G IT +EL + +G+ T A+L ++ D D +G ID+ EF+ M+
Sbjct: 20 LFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMM 74
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 41.9 bits (94), Expect = 5e-05
Identities = 17/57 (29%), Positives = 35/57 (61%)
Frame = +1
Query: 163 RVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKMLL 333
RVFD+D++GYI + ++ +GE ++D ++ ++ D + G DY +FV+ ++
Sbjct: 85 RVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIM 141
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 41.1 bits (92), Expect = 9e-05
Identities = 20/57 (35%), Positives = 37/57 (64%)
Frame = +1
Query: 163 RVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKMLL 333
+VFD+D G I EL+ L +GE +++ +++++L G DG ++Y +FV+M+L
Sbjct: 84 QVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLK-GVPVKDGMVNYHDFVQMIL 139
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 39.5 bits (88), Expect = 3e-04
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +1
Query: 166 VFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKMLL 333
+FD D+ G I+ L+ + + E + D +L ++ D+D DG I+ +EF+ +++
Sbjct: 118 LFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIMM 173
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 38.7 bits (86), Expect = 5e-04
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +1
Query: 163 RVFDRDDNGYITRDELQAALE-MIGEPVTDAQLNQV----LALGDIDHDGRIDYEEF 318
+++D D +GYI+ EL L+ M+G + + QL Q+ + D D DG+I +EEF
Sbjct: 100 KIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEF 156
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 172 DRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 330
D + +G I R+E + + P+ +++ ++ D D G +D++EF+ L
Sbjct: 34 DANQSGSIDRNEFLSIPSVASNPLA----SRLFSVVDEDGGGDVDFQEFINSL 82
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 38.3 bits (85), Expect = 6e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 166 VFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 330
VFD D NGYI E AL + + +L L D+D++G I Y+E ++++
Sbjct: 71 VFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIV 125
Score = 29.5 bits (63), Expect = 0.28
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 12/64 (18%)
Frame = +1
Query: 163 RVFDRDDNGYITRDEL----QAALEMIG--------EPVTDAQLNQVLALGDIDHDGRID 306
+++D D+NG I+ DE+ A +M+G E + ++N++ + D + DG++
Sbjct: 106 QLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLT 165
Query: 307 YEEF 318
EEF
Sbjct: 166 LEEF 169
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 32.7 bits (71), Expect = 0.030
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 166 VFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKM 327
+FD GYI ++L+ + +GE +T QL +L L +G++ EEF ++
Sbjct: 20 LFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGT--NGKVSREEFAEL 71
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 31.5 bits (68), Expect = 0.069
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 181 DNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEF 318
+NGY++ + L ++ +L ++ L DID DG D++EF
Sbjct: 19 ENGYLSGSKAAGVLR--SSKLSSDKLEKIWDLADIDDDGMFDFDEF 62
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 30.3 bits (65), Expect = 0.16
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 172 DRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGD 282
D D GYI +DE A+E+I ++ L +LA D
Sbjct: 346 DTQDRGYIDKDEFAVAMEIIKLRLSGKSLASILAYDD 382
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 7.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 256 LNQVLALGDIDHDGRIDYEEF 318
L + D DH G++ +EEF
Sbjct: 335 LEETFQKADADHSGKLSFEEF 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,286
Number of Sequences: 5004
Number of extensions: 27364
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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