Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17c01f
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   6.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   6.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.1  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +2

Query: 497 VQLPTITYTV*ASPQ*TDTPVGANTKTGKLPIQCFAL 607
           +QLPT+T      PQ T    G   +T     Q   L
Sbjct: 67  LQLPTVTEIQETQPQRTKPTAGKRARTAYTSAQLVEL 103


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +2

Query: 497 VQLPTITYTV*ASPQ*TDTPVGANTKTGKLPIQCFAL 607
           +QLPT+T      PQ T    G   +T     Q   L
Sbjct: 58  LQLPTVTEIQETQPQRTKPTAGKRARTAYTSAQLVEL 94


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 389  IAELRRTTEISLAIFVGSNE*WLLASNTF 303
            IAE+RR + +  A+ +G    W L  + F
Sbjct: 2640 IAEIRRKSRLVKALKLGGGMVWALDLDDF 2668


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,898
Number of Sequences: 336
Number of extensions: 4405
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)