Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b23f
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    38   0.002
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    33   0.038
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.3  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   5.7  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             26   5.7  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   10.0 

>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 81  IFFSIFHVIAFDELKTDYKNPIDQCNSLN 167
           +   IF VI F +L+ DY NPID CN LN
Sbjct: 24  MLLQIFCVIMFSDLEMDYINPIDLCNKLN 52



 Score = 29.9 bits (64), Expect = 0.35
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 208 ITLISRLFQLVLPEYXXXXXXXXXXXXSGEWFSLLINIPLILYHIHR 348
           I L ++L  LV+PE               +W   L N+PL+++H ++
Sbjct: 45  IDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLANLPLLVFHANQ 91


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +1

Query: 208 ITLISRLFQLVLPEYXXXXXXXXXXXXSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLY 387
           I L  +L   VLPE             SG W + L+N+P++ ++      + +MS   ++
Sbjct: 39  IDLSRKLNWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAWN-----AKMIMSNTHMH 93

Query: 388 DPTSIMNADVLTSCQREGWIK 450
           D T+I   DV +S Q+  + K
Sbjct: 94  DSTTIFK-DV-SSRQKRSFFK 112


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 334 YHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREG 441
           +H+ RY+   V +  GLY   S  +   L  C R+G
Sbjct: 454 FHLERYHLHAVAAMGGLYQIMSSTHLKNLFFCSRKG 489


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 517 TPQSTPRSFHKDIGRTTASKMPALSSLPS 431
           TPQ T RS  K      +SKMP   SLPS
Sbjct: 251 TPQKTVRSIVKQTSSPHSSKMPK-HSLPS 278


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 87  FSIFHVIAFDELK--TDYKNPIDQCNSLNPV 173
           F I  +IA D+LK  + Y N ++QC + NP+
Sbjct: 330 FYIPAIIAKDKLKLRSTYVNQLNQCCTFNPI 360


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 179 IYNLSLCIFELPSFHVCFSWFCRNIYCICSLMYCSC 286
           +Y  + C   + + +VC   +C ++YC   L + +C
Sbjct: 181 LYECNACREIVIAGYVCDCGYCLHVYCCKHLAHVNC 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,960
Number of Sequences: 5004
Number of extensions: 51255
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)