Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17b23f
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78065-2|CAB01516.2| 145|Caenorhabditis elegans Hypothetical pr... 81 7e-16
AC006812-2|AAK39349.1| 56|Caenorhabditis elegans Hypothetical ... 41 0.001
Z93380-4|CAB07597.1| 339|Caenorhabditis elegans Hypothetical pr... 31 0.99
AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine re... 31 0.99
AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine re... 29 3.0
AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine re... 29 3.0
U97592-7|AAB52874.2| 332|Caenorhabditis elegans Sperm-specific ... 27 9.2
U80839-17|AAB37921.1| 372|Caenorhabditis elegans Serpentine rec... 27 9.2
>Z78065-2|CAB01516.2| 145|Caenorhabditis elegans Hypothetical
protein T09E8.3 protein.
Length = 145
Score = 81.0 bits (191), Expect = 7e-16
Identities = 40/97 (41%), Positives = 51/97 (52%)
Frame = +1
Query: 226 LFQLVLPEYXXXXXXXXXXXXSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIM 405
L QL+LPEY S + S+L N+PL YHI+ Y RPVMSGPG+YDPT+I+
Sbjct: 48 LNQLILPEYIIHGTFTVLFIFSWQLISILANLPLAFYHIYTYAKRPVMSGPGIYDPTTIL 107
Query: 406 NADVLTSCQREGWIKXXXXXXXXXXXXXGMIVVLIAA 516
N L+S R WIK MI L+ +
Sbjct: 108 NRSTLSSTLRISWIKLAFYLVSFFYYLYAMIYTLVTS 144
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = +3
Query: 21 MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSL 179
MAF+F AF Y++ALI F IFF+I+ VI DEL+TDYKNPI+QC +LN + L
Sbjct: 1 MAFTFAAFCYLLALIAVGFCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLIL 53
>AC006812-2|AAK39349.1| 56|Caenorhabditis elegans Hypothetical
protein Y64H9A.1 protein.
Length = 56
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 364 VMSGPGLYDPTSIMNADVLTSCQREGWIK 450
+M GPG+YDPT+I+N L+S R WIK
Sbjct: 1 MMPGPGIYDPTTILNRSTLSSTLRISWIK 29
>Z93380-4|CAB07597.1| 339|Caenorhabditis elegans Hypothetical
protein F28C12.5 protein.
Length = 339
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 164 ESCKFIYNLSLCIFELPSFHVCFSWFCRNIYCICSLMY 277
E C +Y S C+FEL S+++ +F + Y +CSL +
Sbjct: 98 EPCNLLYRSSDCVFELHSYYLT-GYF--STYSVCSLAF 132
>AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine
receptor, class i protein62 protein.
Length = 334
Score = 30.7 bits (66), Expect = 0.99
Identities = 20/92 (21%), Positives = 39/92 (42%)
Frame = +3
Query: 51 IVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSLFIT*VYVFLNYPHFTSV 230
I++L+ D+F I+ +F D + N C + + + F + YP +
Sbjct: 21 IISLLFDSFSIYLILFKSSKIDNFRYFLLNFQLTCTATDIILTFF--MQPVPLYPLVSGY 78
Query: 231 SVGFAGIFTAFAH*CTVLAVRRMVFVIDQHSF 326
+GF F A H C + + +++ I+ F
Sbjct: 79 ILGFLAQFGASTHFCLTMVIATIIYQIESMVF 110
>AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine
receptor, class i protein61 protein.
Length = 331
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/103 (22%), Positives = 41/103 (39%)
Frame = +3
Query: 51 IVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSLFIT*VYVFLNYPHFTSV 230
+++L+ D+F I+ +F D + N C + F+T YP
Sbjct: 21 VISLLFDSFSIYLILFRSEKIDNFRYFLLNFQLACTVTDIHLTFLTQAIPL--YPLVAGY 78
Query: 231 SVGFAGIFTAFAH*CTVLAVRRMVFVIDQHSFNTIPHTQILHK 359
++GF F H C L V +++ I+ F + Q + K
Sbjct: 79 TMGFLSQFGVTPHVCMTLLVACLIYQIECMIFCFVRKHQTIAK 121
>AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine
receptor, class i protein63 protein.
Length = 334
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/103 (23%), Positives = 44/103 (42%)
Frame = +3
Query: 51 IVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSLFIT*VYVFLNYPHFTSV 230
+++LI D+F I+ +F D + N C +L + L V L YP +
Sbjct: 21 VISLIFDSFSIYLILFKSSKIDNFRYFLLNFQLAC-TLTDIHLTFFMQPVPL-YPLVSGY 78
Query: 231 SVGFAGIFTAFAH*CTVLAVRRMVFVIDQHSFNTIPHTQILHK 359
++GF +F H C + +++ I+ F + Q + K
Sbjct: 79 TLGFLSMFGVTTHFCMTALMACLIYQIESMVFCFVRKHQTIAK 121
>U97592-7|AAB52874.2| 332|Caenorhabditis elegans Sperm-specific
family, class rprotein 2 protein.
Length = 332
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 27 FSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSLFI 185
F+FP + AFL+ FS+ V +F E+ ++ + + LN + + +
Sbjct: 74 FNFPDMRRLSIASASAFLLVFSVDDVTSFKEMSDIWQEICSRRSDLNELPIVV 126
>U80839-17|AAB37921.1| 372|Caenorhabditis elegans Serpentine
receptor, class w protein97 protein.
Length = 372
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 30 SFPAFAYIVALITDAFLIFFSIFHVIAFD-ELKTDYKNPIDQCNSLN 167
S P F ++V F FFS+ + +D LK D P D C ++
Sbjct: 156 SKPRFGFLVIFWCFLFSAFFSLVYYFRYDFVLKKDPWQPKDHCTDVD 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,400,704
Number of Sequences: 27780
Number of extensions: 288511
Number of successful extensions: 658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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