Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b22r
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   3.2  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   5.6  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    26   5.6  
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    25   7.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.4  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.8  

>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 248 TVAANNSQARLWLHRLVEQPGCELPPLGKKSVRAI 352
           T AAN       L RL + P C LP LGK+ +  I
Sbjct: 250 TTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTI 284


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 22/77 (28%), Positives = 31/77 (40%)
 Frame = +2

Query: 323 PLGKKSVRAIADPIPRPLVLPSV*IAST*TPSPGLRRFELVFHRGPAGSNPVMRATLPPN 502
           PL   SV A+ D  P P   PS+        S  +   E+  H     + P   AT  P 
Sbjct: 443 PLPSASVPALGDGSPDPPAAPSI------QNSLSVHESEMPPHVTRDYTQPAASATPVPK 496

Query: 503 SRPAFPTT*APKLKPAK 553
            +P+  +   PK K +K
Sbjct: 497 EKPSEKSEKPPKKKGSK 513


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 245 VTVAANNSQARLWLHRLVEQPGCELPPLGKKSVRAIADPI 364
           +T  A  ++ RL L+R VE    +LPP G +  R  +  I
Sbjct: 34  ITYPAEFAKTRLQLYRNVEGTKAKLPPFGLEWYRGCSTVI 73


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 233 KWLYVTVAANNSQARLWLHRLVEQPGCELPPLGKK 337
           KW Y +    ++   LWL+ ++   G  L P GK+
Sbjct: 140 KWAYQSKHKGSNLDELWLYMVLAAIGETLDPTGKE 174


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 462 AGPLWNTNSNRLRPGDGVY--VEAIHTDGSTSGLGIGSAIARTDFFPNGGNSQPGCSTSL 289
           A P   +N+    PG G++    A  ++ + +G G G+  A    F    N+    ST L
Sbjct: 263 ATPFGTSNATNTTPGSGLFGGGSAFGSNTTNTGFGSGTNNASGGLFGQNNNTTSTPSTGL 322


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = -3

Query: 399 AIHTDGSTSGLGIGSAIARTDFFPNGGNSQPGCSTSLCNHNRAWELFAATVTYNHLVGTQ 220
           ++ +  ++S   I SA A+T    +  ++  G STS  + + +    +++ +Y    G  
Sbjct: 182 SVSSSSASSSGSISSADAKT-VSASSNSTISGFSTSTTSASSSAAGNSSSSSYTSYSGAV 240

Query: 219 CNNMAQVTANTCRG 178
            N +AQ++   C G
Sbjct: 241 SNGVAQLSVAACMG 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,373
Number of Sequences: 5004
Number of extensions: 59609
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)