Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b22r
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.12 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 474 GLDPAGPLWNTNSNRLRP-GDGVYV--EAIHTDGSTSGLGI 361
           G  P G LWN N+ RL P  D  Y   E I  +G  S L I
Sbjct: 802 GEKPIGILWNMNNKRLDPKSDSRYTIREEILANGVLSDLSI 842



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 269  GNYLLLRLHTTTWSALNATIWHKLRLTLAVEDALTWAMTI*GKLDPA 129
            GN+++L L   TW  L  T  +     +A  +  T  +T  G + PA
Sbjct: 1517 GNFVVLDLVPATWYHLRVTAHNNAGFAVAEYEFATLTVT-GGTIAPA 1562


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -1

Query: 338 ISSPMAATHSPAAPLACVTTIELGNYLLLRLHTTT 234
           +SS  +  H P AP   +TTI           TTT
Sbjct: 641 LSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTT 675


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 247 YIQPLGRHSMQQYGTSYG 194
           Y  P+GR   + YG S G
Sbjct: 421 YFMPIGRPRAKDYGHSSG 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,694
Number of Sequences: 438
Number of extensions: 5086
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)