Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b22f
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    29   0.85 
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    27   2.6  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   7.9  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   7.9  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 142 IPDDEGNLHKVDLEAEPDYDLL-DKVNRNNANQYFL 246
           +PD + N  + D +     D+L D+VN+N  N+Y++
Sbjct: 7   LPDIDSNEGETDADVYEVEDILADRVNKNGINEYYI 42


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 603 WKRRS*IRRKGCSHHRVGSRRTSMXIPTRTV 695
           W +RS    K  S H  G+RR SM  PT+++
Sbjct: 181 WNQRSLSSGKPPSLHLSGNRRLSMGSPTKSI 211


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 100 EEPLQRGEYPRYMDIPDDEGNLHK 171
           +E  Q      Y D PDDEGN+ K
Sbjct: 124 DEAKQMASEVEYEDGPDDEGNMFK 147


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 244 ENIDWHYSCSPYPAGRSQVRLQDLL 170
           EN +W+   +PY A  SQ RL+ ++
Sbjct: 151 ENPEWYTQYTPYQAEISQGRLESMM 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,076
Number of Sequences: 5004
Number of extensions: 57789
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)