Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b22f
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0917 + 20798977-20801369,20801578-20801581                       31   0.67 
04_04_1125 + 31085106-31085714                                         30   2.0  
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533...    29   4.7  
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442...    28   6.2  
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609...    28   6.2  
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29...    28   8.2  

>04_03_0917 + 20798977-20801369,20801578-20801581
          Length = 798

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 559 SNMHLAGFSLGAHVVGNAGRELGGRVARITGLDPAGPLWXYQL 687
           +N HLAG  LG + V    R L   V+R   +DPA  ++ Y+L
Sbjct: 156 TNTHLAGAKLGRNKVTGLNRRL---VSRKNSVDPASGMYSYEL 195


>04_04_1125 + 31085106-31085714
          Length = 202

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = -2

Query: 629 PPNSRPAFPTT*APKLKPAKCMLEKAAPVAWLRKVKNCPTARPTPGTPLT 480
           PP   PA PTT      P         P  W       P    TP TP T
Sbjct: 48  PPTPTPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTT 97


>04_03_0857 +
           20352331-20352582,20352740-20352951,20353047-20353308,
           20353418-20353726
          Length = 344

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 568 HLAGFSLGAHVVGNAGRELGGRVARITGLDPAGPLW 675
           +L GFS+G  ++ +  + +  R+A +  L P G  W
Sbjct: 134 YLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYW 169


>04_04_0239 -
           23843235-23843243,23843334-23844047,23844138-23844287,
           23844389-23844601,23844697-23844811,23844919-23846300,
           23847217-23847279
          Length = 881

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 238 IDWHYSCSPYPAGRSQVRLQDLLCEDCLHHQGYPYNVDT 122
           +D H S S    G   V L D+  +   H  GYPY VDT
Sbjct: 228 LDMHNSGSTKSLGLKGVLLDDIKAQ-AEHVSGYPYYVDT 265


>04_03_0858 +
           20357519-20357573,20358072-20358119,20360675-20360922,
           20361152-20361363,20361480-20361741,20361832-20362143
          Length = 378

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 568 HLAGFSLGAHVVGNAGRELGGRVARITGLDPAGPLW 675
           +L GFS+G  ++ +  + +  R+A +  L P G  W
Sbjct: 167 YLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYW 202


>12_01_0035 -
           295988-296408,296645-296813,296929-296965,297097-297173,
           297391-297631
          Length = 314

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = -3

Query: 190 VRLQDLLCEDCLHHQGYPYNVDTRLSVTVLPA*APQQQDMLRW 62
           V L++++  +  +HQG P N+D  LS+ + P    ++++++ W
Sbjct: 242 VVLKEMIYNEGSNHQGGPLNLD--LSLDICPRGEKRKRELISW 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,043,726
Number of Sequences: 37544
Number of extensions: 393377
Number of successful extensions: 1135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)