Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b22f
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    27   9.8  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical
           protein C28D4.5 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 145 PDDEGNLHKVDLEAEPDYDLLDKVNRNNANQYFLFTRRN 261
           P D   +H VD   +PD  ++D+  +   NQ F F R +
Sbjct: 34  PRDALTIHNVDFVIDPDEKMVDEYMKVYGNQRFNFKRND 72


>U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical
           protein C02B8.6 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 115 RGEYPRYMDIPDDEGNLHKVDLEAEPDYDLLDKVNRNNAN 234
           +G+ PR  D+ DDE  +   +++ +PD +LL      N N
Sbjct: 62  KGDAPR--DVDDDEEEVQDEEIDVKPDVNLLRAAMNANQN 99


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 519 LPNSSADTRYSPYCCGIV*PRKIAPVDRNYVHV 421
           +P  + +T +   CC    PR +A +D  Y+H+
Sbjct: 140 VPPCARNTTFGTRCCVYEDPRVLANIDDQYLHI 172


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 526 LRTAQQLGRHPVLPLLLWYSLTE-KDSSSRQKLCSRRL 416
           L+T Q L +   +   L   +T+ KD   R+KLCS++L
Sbjct: 715 LKTVQHLKKEQTISCNLTNEITKLKDQIEREKLCSKQL 752


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 526 LRTAQQLGRHPVLPLLLWYSLTE-KDSSSRQKLCSRRL 416
           L+T Q L +   +   L   +T+ KD   R+KLCS++L
Sbjct: 749 LKTVQHLKKEQTISCNLTNEITKLKDQIEREKLCSKQL 786


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,161,329
Number of Sequences: 27780
Number of extensions: 338280
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)