Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b20f
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    32   0.32 
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    29   2.3  
Z19156-2|CAE17940.2|  275|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   3.0  
AC006790-1|AAY55890.1|  309|Caenorhabditis elegans Hypothetical ...    28   5.3  
AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical ...    28   7.0  
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    28   7.0  
AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
 Frame = +3

Query: 177 QELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSV---- 344
           +E A+A +E SEN D + + D  IP ++V    ++   +EN+E  +++++  A++     
Sbjct: 17  EEHAVAPVEDSENPDVIQLDDDVIPEEDVPDDEETAENLENLENVLDDSEIIAENSGEAD 76

Query: 345 SFVENLDAPVEDAD 386
             VE  D P  D D
Sbjct: 77  QEVEEEDNPFADDD 90


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -2

Query: 498 PQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRH 319
           PQ+   R  +    QP    PQ +H+R   ++  Q     PQ + R  +   Q+Q   R 
Sbjct: 524 PQMSQMRMQQQQPQQPNMNSPQSQHQRAPNNMNMQQNLPNPQQQMR--IPQAQNQMQQRI 581

Query: 318 SQLELRHF-LRSLQNQQG 268
            Q+  +   ++  QN  G
Sbjct: 582 PQVSPQQMQMQQQQNMNG 599


>Z19156-2|CAE17940.2|  275|Caenorhabditis elegans Hypothetical
           protein T02C1.2 protein.
          Length = 275

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 489 PVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEA 668
           P+  A +Q AP+++ +  V +  +EIEN      IS V  P   DE+ N + I+      
Sbjct: 213 PIRRAAIQPAPIHLNESLVVEVIDEIENVPVNTQISPVMPP---DEESNPVEIITCDQNQ 269

Query: 669 QP 674
           QP
Sbjct: 270 QP 271


>AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical
           protein ZC178.1 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 32/118 (27%), Positives = 51/118 (43%)
 Frame = -3

Query: 506 IGVLNWSIDVVYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSRE 327
           IGV+   +D V     +   IGVL   +D V  V  +   IGV+   ++       V   
Sbjct: 427 IGVVLEELDSVELVMSVEYTIGVLLEELDSVELVMSVEDTIGVVLEELDSVELVMSVEYT 486

Query: 326 IGILNWSFDIFYEVYRINREIDVVNGNFNVKNRNVVYIFAQFNPGQGEFLNDFVGDDV 153
           IG+L    D    V  +   I VV G    +N +VV    +  P    F+++ +G++V
Sbjct: 487 IGVLLEELDSVELVMPVVDTIGVVTG-LGTENCDVVENSFEVLPDLWFFMSN-MGENV 542



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/89 (25%), Positives = 35/89 (39%)
 Frame = -3

Query: 506 IGVLNWSIDVVYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSRE 327
           IGV+   +D V     +   IGV+   +D V  V  +   IGV+   ++       V   
Sbjct: 187 IGVVLEELDSVELVRSVEDTIGVVLEELDSVELVMSVEDTIGVVREKLDSVELVMSVEDT 246

Query: 326 IGILNWSFDIFYEVYRINREIDVVNGNFN 240
           IG++    D    V  +   I VV    N
Sbjct: 247 IGVVREKLDSVELVMSVEDTIGVVLEELN 275


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 474  DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDE 626
            D  DAP+   D     +N+VDE +++   ++E+D E       E+ AE D+
Sbjct: 2429 DAQDAPLAAPDAPPG-INLVDEIMQQVQRDVEDDEEDEDGDQNEHEAEEDD 2478


>AC006790-1|AAY55890.1|  309|Caenorhabditis elegans Hypothetical
           protein Y49F6B.13 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 290 EVYRINREIDVVNGNFNVKNRNVVYIFAQFNPG--QGEFLN 174
           +V+R+ + I   NGN N+    ++     F+PG  +G F+N
Sbjct: 212 DVFRVLKFISPQNGNSNIDASKLIQQLTGFSPGFREGHFVN 252


>AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical
           protein Y105E8B.3 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 237 DIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPV 374
           DIE+P ++   P DS N  EN E   E  +  AD    VE   A V
Sbjct: 415 DIELPPEDFKRPADSENDDENDEDEEEGEEEDADGHVAVEEQVAKV 460


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
           protein Y46G5A.6 protein.
          Length = 1002

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 480 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAEL 620
           +D P  D+++ +A  N+    VEK+ E+++     G     +  AEL
Sbjct: 858 LDEPPSDSEVYIAKTNLAPVRVEKSAEKVKKSRNSGQKLSTDSSAEL 904


>AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical
           protein Y37D8A.1 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = -2

Query: 477 CLRS*QNQPGHRRPQLE-HRRCLRSLQNQPGHRRPQLEHRGF-LRSLQSQPGNRHSQLEL 304
           CLR  Q  P     Q + H   L  L   PG         GF L S+   P ++  + E+
Sbjct: 80  CLRKLQKSPNKIAGQKDLHALALSHLLPIPGEN-------GFPLNSMYKAPQSKPDEDEM 132

Query: 303 RHFLRSLQNQQGNRRCQREF 244
           R +L+ ++ + G R C   F
Sbjct: 133 RAYLQQIRQEIGARLCDLAF 152


>Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical
           protein T12G3.1 protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +3

Query: 489 PVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYP----AELDE--DGNGLVIV 650
           PVE    +V P+      +  + E I +D E  S SW  YP    A+  E  D N L   
Sbjct: 566 PVESNPEEVTPMVTAPISIHSSFENISSDFESLSPSWGGYPDLEAAQRLEVIDDNLLDFS 625

Query: 651 DLPIEAQ 671
           D+ +EAQ
Sbjct: 626 DVAVEAQ 632


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,195,900
Number of Sequences: 27780
Number of extensions: 308344
Number of successful extensions: 1320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)