Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b18f
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1164 + 28104181-28104272,28104359-28104989                       28   4.4  
05_03_0454 - 14227447-14228040                                         28   4.4  
02_05_0031 - 25215587-25216145,25218108-25218133,25218262-252184...    28   4.4  
01_05_0490 + 22672241-22674679                                         27   5.8  

>06_03_1164 + 28104181-28104272,28104359-28104989
          Length = 240

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 103 NGWSRTWAPVHSASLLPVYCQR 168
           NGW R WA   S +++ V C R
Sbjct: 146 NGWRRVWAEGDSKAVVDVVCDR 167


>05_03_0454 - 14227447-14228040
          Length = 197

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 41  IFKRKSSSLIIVCEVNGNLLRMGGHGHGPP 130
           +F R    +I   E++G L R+G  G  PP
Sbjct: 48  MFDRDGDGVITPAELSGALCRLGARGEAPP 77


>02_05_0031 -
           25215587-25216145,25218108-25218133,25218262-25218486,
           25219809-25220111
          Length = 370

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 103 NGWSRTWAPVHSASLLPVYCQR 168
           NGW R WA   S +++ V C R
Sbjct: 276 NGWRRVWAEGDSKTVVDVVCDR 297


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 125 PPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPG 262
           PP   P     +V+ +P+ +ELE  + V+ +K P   +    + PG
Sbjct: 466 PPPARPRRRSRSVESLPRTEELEAEIVVEEIKYPLPSSSPAMFPPG 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,710
Number of Sequences: 37544
Number of extensions: 288739
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)