Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b18f
         (471 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-P...    99   3e-21
AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox pro...    29   2.4  

>AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-PA
           protein.
          Length = 110

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +2

Query: 104 MGGHGHGPPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP-GFGTRWQ 280
           MGGH HG PYTVPH S + V+ +PQL E+++AL  +GLKDPW+RNE WRY P  FGT   
Sbjct: 1   MGGH-HGEPYTVPHASTYKVESVPQLVEVKEALGRQGLKDPWLRNEVWRYEPKAFGTHRS 59

Query: 281 RARKFFFRGFPIGLGLTVITVALD 352
           R   F FRG  +G    + TVA++
Sbjct: 60  RLNTFLFRGLGVGFCAFLATVAVE 83


>AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox
           protein Scarecrow protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 355 FIQSHCDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISD 230
           + Q+H   C+ Q+  K+  E+   + PAS+  RV  P L+ D
Sbjct: 212 WFQNHRYKCKRQAKRKAMAEQNQHNQPASSPRRVAVPVLVKD 253


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,508,118
Number of Sequences: 53049
Number of extensions: 473754
Number of successful extensions: 1428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1601407269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)