Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b17f
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   5.1  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   6.7  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.9  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   8.9  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 516  QPSQWKQQLCWYLGLGCRLRQNFRC 590
            QP QW Q+LC    L CR   ++ C
Sbjct: 1785 QPFQWFQELCVKAFLACRPYAHYIC 1809


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 358 TLAFGTANIFSGGTRVTTSSVHMHGSYNMNN 450
           T +FG A      T  +TSS    GS N NN
Sbjct: 67  TFSFGKAATTGNSTNASTSSPFSFGSTNTNN 97


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 587 MLLREPTTNKNAKSAFRSLLTPS--APGLLETL*SLAPP----SVFDGSNGRKHL 733
           +L R+P     AKS + SL+ PS  A G++  +  L PP    S   G +G  HL
Sbjct: 148 LLTRDPFEKTIAKSFYISLVYPSLIAAGVVSLVTILVPPMRMASDLVGQSGLDHL 202


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 418 VHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLAS 528
           V  H   +MNNLH  +  ++H      N+   I+  S
Sbjct: 135 VGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTS 171


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 651 RLRPDFWKHSDHWLHPLCLTALTVASTCRGDSGGPLT 761
           R RP F   S+    P  LT+++ AST +GD+  P T
Sbjct: 579 RSRPSF---SEKSTFPAPLTSISQASTFQGDNRSPST 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,380
Number of Sequences: 5004
Number of extensions: 49296
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)