Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b11f
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.03 |||mitochondrial ribosomal protein subunit Img2|Schiz...    52   1e-07
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.4  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    26   5.4  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   5.4  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    25   7.2  

>SPAC3H8.03 |||mitochondrial ribosomal protein subunit
           Img2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 27/84 (32%), Positives = 46/84 (54%)
 Frame = +1

Query: 343 YFLSRTKNAELPIYLKITYRGMRKISIIRKIEGDIWLLNDEIKQYLKQKNKRYVETRVHE 522
           + +SRT +  LP+YL    RG + +++IRKI GD   L   +   LK   K   +  V++
Sbjct: 25  FHVSRTPSKNLPVYLDYKQRGTKILTLIRKIHGDSNALRLRLISTLKMSPK---DVYVNK 81

Query: 523 VARLIETKGDYVNDLREWALSKGF 594
           +   +  KG+++  +REW   +GF
Sbjct: 82  LTNQVVLKGNHIVTVREWLQDQGF 105


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 145 LKIVPIVIPAIILHPNQVSCSRFVHFFQIKVAQT 44
           L  VPI++  IIL+   V  S +V    I+V QT
Sbjct: 613 LSFVPILVSFIILYNTMVPISLYVSMEIIRVFQT 646


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 324 FFWGDPS*RITIFGNYLRYSSKRQQTFDVFP 232
           FF G P  R+  FG   R  ++RQQ  D+ P
Sbjct: 231 FFGGGPGIRVHQFGGRPRNFARRQQAQDMPP 261


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 319 KEEALNHPYFLSRTKNAELPIYLK 390
           +EEA  HP FL   ++ EL + LK
Sbjct: 93  REEARRHPKFLKNQEHLELMVALK 116


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 175 FVRKIKEQYNYEIEKNPPEWEYVKRLLPFTTIPKI 279
           F + ++ +Y+    +   +W Y K ++P TT  KI
Sbjct: 210 FTKSLESKYHVSDTQILLKWAYSKGVIPITTTSKI 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,935
Number of Sequences: 5004
Number of extensions: 58286
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)