Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b11f
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.052
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.48 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 63  WKKWTNLEQLT*FGCKIIAGITIGTIFKTLL*LRKITV 176
           W++ T+L +L   GCK++  I  G  F+ LL L+K+TV
Sbjct: 88  WQRLTSLHELHVHGCKVLR-IPEGA-FQPLLELKKLTV 123


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 25/102 (24%), Positives = 45/102 (44%)
 Frame = +1

Query: 94  LDLGAKLLPESQLALSSKHYSSYGKSPFVRKIKEQYNYEIEKNPPEWEYVKRLLPFTTIP 273
           LDL ++L  + Q ++ S+HYS+       R I       IEK    W+Y    +P     
Sbjct: 286 LDLRSQLEYDLQTSIMSRHYST-------RAIV------IEKGQSIWDYDSTYIPKVKNK 332

Query: 274 KIIPKDSYPSGWVPPKEEALNHPYFLSRTKNAELPIYLKITY 399
           K   K    + W+ P+   +     + +T++  + IY +I +
Sbjct: 333 KAGSKHLLQNTWLDPEYPMIR----VHKTQSQTIDIYSRIGF 370


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 109 KLLPESQLALSSKHYSSYGKSPFVRKIKEQYNYEIEK-NPPEWEYVKRLLPFTTIPKIIP 285
           K + E++  +     + YG+ P   K+K  +N  +EK N  + +  K  + +  + K+IP
Sbjct: 42  KCIGETKTTIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGK--IRYNLLKKVIP 99

Query: 286 K 288
           +
Sbjct: 100 E 100


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 29  YEHTPRLRDFYLEKMDES*TTHLIWVQN 112
           Y++TPR   +Y+   ++   +HLI  +N
Sbjct: 328 YDNTPRDFPYYMYSREQYSQSHLISNEN 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,547
Number of Sequences: 438
Number of extensions: 4112
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)