Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b10f
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0133 + 1621574-1625779                                           28   3.5  
01_01_0088 + 688792-691441,691629-693013                               28   3.5  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    27   6.1  
09_03_0057 + 11944973-11947159                                         27   6.1  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    27   6.1  
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351     27   6.1  
05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003     27   6.1  
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    27   6.1  
11_06_0400 - 23134994-23135113,23135140-23135220,23135892-231359...    27   8.1  
09_06_0210 - 21597470-21598093                                         27   8.1  

>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 169 ATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 270
           A + +VG GG+G T  T    +  R   HF+V+IW
Sbjct: 221 AVLPVVGPGGIGKTTFTQHLFHDQRVKKHFHVRIW 255


>01_01_0088 + 688792-691441,691629-693013
          Length = 1344

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 181 LVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 270
           +VG GGVG T       N  R   HF V IW
Sbjct: 257 IVGPGGVGKTTFAQHLYNDHRTKQHFTVMIW 287


>11_02_0051 +
           7776312-7780228,7780627-7780695,7781920-7781979,
           7782225-7782324,7782720-7782801,7782928-7782940,
           7783621-7783681
          Length = 1433

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 166 FATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 270
           + T  +VG GG G T +     N  R   HF+V++W
Sbjct: 204 YCTSAIVGHGGAGKTTLAQYIYNDERVVNHFDVRMW 239


>09_03_0057 + 11944973-11947159
          Length = 728

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 190 GGVGSTFVTLQFRNSARRGYHFNVQIW 270
           GGVG T +  Q  N  R   +F+V+IW
Sbjct: 264 GGVGKTTLARQVYNDERVKGYFDVRIW 290


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 190 GGVGSTFVTLQFRNSARRGYHFNVQIW 270
           GG+G T +     N AR   HF++Q W
Sbjct: 671 GGMGKTTLARLVYNDARVQNHFDIQAW 697


>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
          Length = 1007

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 181 LVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 270
           +VG GGVG T +T    N  R   HF +++W
Sbjct: 200 IVGMGGVGKTTLTQLVYNDVRVKKHFQLRMW 230


>05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003
          Length = 385

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 263 RFGDAKPHLSTRKTHMHLFVTQR 331
           +  +A PH S R TH+H F+  R
Sbjct: 15  KHANAIPHASARPTHLHTFLIPR 37


>02_01_0137 +
           988442-988641,989088-989281,989369-989488,989594-989673,
           990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 160 SQFATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 270
           S    V LVG GGVG T +     N+ R   HF++++W
Sbjct: 433 SDLDVVPLVGVGGVGKTTLARFVYNNNRIENHFDLRMW 470


>11_06_0400 -
           23134994-23135113,23135140-23135220,23135892-23135959,
           23136982-23137078
          Length = 121

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 164 WDTPTSRARTALTRLPAGAVYLTLTACELAVAARVTTK 51
           W T   + + A   LPA AV + LT+ + A AA + TK
Sbjct: 85  WQTGNGQRKAAQLCLPANAVRVRLTSLQCA-AAELPTK 121


>09_06_0210 - 21597470-21598093
          Length = 207

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 195 PAPDKADSRELGHPYFPGSDGP-DASTGGRRV 103
           P PD A  +    P +PGS  P   +TGGRRV
Sbjct: 26  PRPDPASPQPDPTPGWPGSLWPASPATGGRRV 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,809,965
Number of Sequences: 37544
Number of extensions: 210847
Number of successful extensions: 661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)