Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17b10f
(419 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 29 1.0
AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen prot... 28 3.1
Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 4.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 4.1
Z93379-9|CAE11301.1| 354|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 27 7.2
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 27 7.2
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81143-1|CAB03513.1| 381|Caenorhabditis elegans Hypothetical pr... 26 9.5
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 216 SPVQKLSTKRISLQCTDLGTLNLICPPVKHIC 311
S Q S+ + +CT +G++ L CP V +C
Sbjct: 415 SNCQTASSCTSNFECTSIGSMQLCCPTVASVC 446
>AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen protein
54 protein.
Length = 281
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 192 APDKADSRELGHPYFPGSDGPDASTG--GRRVPHVD 91
AP K +R G P PG +GP G G++ PH D
Sbjct: 190 APGKNGNRGSGAPGAPGPEGPIGEPGKDGQQGPHGD 225
>Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical
protein M18.1 protein.
Length = 337
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 162 GHPYFPGSDGPDASTGGRRVPHVDSLRAGCRSTS 61
GHP PG+ GP + G P D+ C S S
Sbjct: 248 GHPGQPGNAGPPGTPGAAGQPGGDAAYCPCPSRS 281
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 168 ELGHPYFPGSDGPDASTG 115
E GHP PG DGP+ + G
Sbjct: 56 EPGHPGAPGQDGPEGAPG 73
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 168 ELGHPYFPGSDGPDASTG 115
E GHP PG DGP+ + G
Sbjct: 56 EPGHPGAPGQDGPEGAPG 73
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 168 ELGHPYFPGSDGPDASTG 115
E GHP PG DGP+ + G
Sbjct: 56 EPGHPGAPGQDGPEGAPG 73
>Z93379-9|CAE11301.1| 354|Caenorhabditis elegans Hypothetical
protein F21H7.14 protein.
Length = 354
Score = 27.1 bits (57), Expect = 5.5
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 418 FFFPLKYILINNLEYKSINKL*YC-FLNLKPLSHKQMHMCFTGGQMRFSVPKSVH*SDIL 242
F FP+ YILI+N + Y F L L+H H+ T + + PKSV + L
Sbjct: 195 FIFPI-YILISNTNNLHLVIYVYIPFFALNTLAHFLFHIWCTVYYLYIAPPKSVSMATQL 253
Query: 241 FVLSF*TG 218
+ +F G
Sbjct: 254 YQRNFLVG 261
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 255 QCTDLGTLNLICPPVKHIC 311
QCT +GTL CP IC
Sbjct: 263 QCTTMGTLQQCCPTYLFIC 281
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 162 GHPYFPGSDGPDASTGGRRVPHVDSLRAGC 73
G P GSDG + GGR +P D+ C
Sbjct: 256 GQPGNRGSDGHPGTPGGRGLPGPDAAYCAC 285
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 162 GHPYFPGSDGPDASTGGRRVP 100
G+P PG+DGP + GG+ P
Sbjct: 188 GNPGAPGTDGPAGNKGGQGPP 208
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 255 QCTDLGTLNLICPPVKHIC 311
QCT +G+ CP HIC
Sbjct: 318 QCTLIGSQQTCCPTASHIC 336
>Z81143-1|CAB03513.1| 381|Caenorhabditis elegans Hypothetical
protein ZK265.2 protein.
Length = 381
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 162 GHPYFPGSDGPDASTGGRRVPHVDSLRAGC 73
G P PG DGP G P D+ C
Sbjct: 256 GQPGHPGPDGPSGDVGEVGAPGADAAYCPC 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,020,029
Number of Sequences: 27780
Number of extensions: 173914
Number of successful extensions: 711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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