Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b09f
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911...    33   0.26 
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    31   0.79 
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533...    29   3.2  
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351...    29   4.2  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    29   4.2  
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779...    28   9.8  

>03_02_0523 +
           9112577-9112608,9112626-9113251,9113696-9113747,
           9114713-9114782
          Length = 259

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
 Frame = +3

Query: 81  DAIQNLERFGSLNKYYYYSNAQRNPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTA 260
           D+I  +E    L    + S++  N I+   D F +         ++WD+  + + H G  
Sbjct: 100 DSINGIESHKMLKVQAFSSSSSSNNIS--SDAFTSSRSNGTKDTDSWDMQHLEYDHPGLM 157

Query: 261 TTTINPIVKDAFLRSGNYNVIVV-DWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLN 437
               +  +++A+   G Y+V++  D +S  +   +  V+      + I   L  L    N
Sbjct: 158 LLPYDDDIEEAYDVLGQYDVVMKNDLASGDVDGSAAGVIDEKLYSNGIEDLL-ILPRGQN 216

Query: 438 KVHIVGFNLGAHV 476
            +H+V  N+  H+
Sbjct: 217 SIHVVYANIVCHL 229


>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 366 AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 518
           A +A   +   IA +LKN KL ++++ +    L   +A +    + GK+ +
Sbjct: 405 AKLAANWIMGDIAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGK 455


>05_03_0376 -
           13252220-13252354,13252433-13252541,13253279-13253337,
           13253608-13253700,13254078-13254153,13254405-13254467,
           13254535-13254629,13254743-13254845,13254930-13255024,
           13255098-13255156,13255445-13255656,13256090-13256222,
           13256691-13257081
          Length = 540

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 54  AFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNPITLTEDHFP 182
           A  F + +  ++++  R   L+K +  SNA+   I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258


>07_03_0474 +
           18534071-18534238,18534349-18534445,18534992-18535122,
           18535191-18535286,18535459-18535464,18535521-18535688,
           18535892-18536020,18536613-18536673,18536928-18537031,
           18537137-18537220,18538433-18538461,18538506-18538617,
           18539200-18539313,18539767-18539832,18540237-18540309,
           18540396-18540482,18540710-18540764,18540869-18540940,
           18541039-18541101,18541177-18541294,18541377-18541451
          Length = 635

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +3

Query: 480 GVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 638
           G+  +N  G   R  G+  SA D    +  +    A  V+ ++ TDGS +        +G
Sbjct: 185 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGVHG 244

Query: 639 LGIAIGHIDFFVNGRLVQP 695
           +GIAIG +D +V    + P
Sbjct: 245 IGIAIGKLDLYVAAAGINP 263


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 615 GSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAA 749
           G  ++   +G  +GH+ +  +G+    GC   + S   A E  AA
Sbjct: 320 GGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAA 364


>08_02_1170 +
           24876197-24877070,24877563-24877606,24877805-24877900,
           24877999-24878544
          Length = 519

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 439 LLSGNLRFFKKVAILDPTPVTAITAVEYVDRLNDDQSTTITL*L--PLLKNASLTIGLIV 266
           +LS  LRF K    L   PV  + +    +  +DD +TT+ L L   L K+  +   L++
Sbjct: 393 ILSNGLRFLKGAPTLVIVPVACVFSGIMTEFTSDDSTTTLVLPLFAELAKSIEVHPALLM 452

Query: 265 V 263
           V
Sbjct: 453 V 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,094,216
Number of Sequences: 37544
Number of extensions: 451352
Number of successful extensions: 1296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)