Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17b08r
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 72 9e-14
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 57 4e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 56 7e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 52 1e-07
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 45 1e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 42 1e-04
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 32 0.12
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.66
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 1.1
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 28 2.0
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 2.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.7
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 6.1
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 6.1
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 8.1
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 8.1
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 72.1 bits (169), Expect = 9e-14
Identities = 35/90 (38%), Positives = 52/90 (57%)
Frame = -1
Query: 856 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 677
+ DS + K+ + + DKLVV+DF ATWCGPCK I PK ++ +
Sbjct: 5 VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61
Query: 676 XIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
IA+E +++MP+F KNG+K++E GAN
Sbjct: 62 EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 56.8 bits (131), Expect = 4e-09
Identities = 29/91 (31%), Positives = 48/91 (52%)
Frame = -1
Query: 856 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 677
++ D TR++ DK+ V+DF A WCGPCK + P L+++ +E
Sbjct: 22 VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78
Query: 676 XIASEYNINSMPTFVFVKNGKKLDEFSGANV 584
IA + + ++PT V + G++LD GA+V
Sbjct: 79 DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 56.0 bits (129), Expect = 7e-09
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -1
Query: 802 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFV 626
+ +D A WCGPCK I P ++A++ AS + +MPTFVF
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81
Query: 625 KNGKKLDEFSGAN 587
+NGK++D +GAN
Sbjct: 82 ENGKQIDMLTGAN 94
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 52.0 bits (119), Expect = 1e-07
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -1
Query: 811 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXIASEYNINSMPTF 635
DK++++ F A WCG CK + P+ + A E+ + SEY+I PT
Sbjct: 39 DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98
Query: 634 VFVKNGKKLDEFSG 593
KNGK++ ++SG
Sbjct: 99 NVFKNGKQISQYSG 112
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -1
Query: 808 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVF 629
K V+++F A WCG CK + P +++A E S +I+ PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432
Query: 628 VKNGKKLD 605
K K++
Sbjct: 433 FKANDKVN 440
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = -1
Query: 865 SIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXX 686
S+ I + + L +++++++F A W PCK + D+ A +
Sbjct: 2 SVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEAE 60
Query: 685 XXXXIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
IA +++N++P FV + K L SGAN
Sbjct: 61 KFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Frame = -1
Query: 862 IHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXX 689
+ ++ ++L+ + A K +I+F ATWCG CK + P +E+ A E
Sbjct: 23 VELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81
Query: 688 XXXXXIASEYNINSMPTFV-FVKNGKKLDEFSGA 590
+A +Y+I PT + F +G + ++S A
Sbjct: 82 DTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115
Score = 30.3 bits (65), Expect = 0.38
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 808 KLVVIDFMATWCGPCKMIGPKLDEI 734
K V+++F A WCG CK + P + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 31.9 bits (69), Expect = 0.12
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Frame = -1
Query: 850 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI 671
+S + + + G LVV F A WCG CK + P ++A+ +
Sbjct: 37 NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94
Query: 670 A--SEYNINSMPTFVFVKNGKKLDEFSGAN 587
A S+Y + PT V K S +
Sbjct: 95 AVCSQYQVQGFPTIKLVYPSSKGSSLSSTD 124
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -1
Query: 775 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 605
CG CK +GP D E A E ++S NI ++PT +NG+ ++
Sbjct: 54 CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113
Query: 604 E 602
E
Sbjct: 114 E 114
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 430 KFITDVKNIFYSFIKNVYMFFFFNSILVSI 519
KFI D +N F+ I Y F F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 425 SSNSLQTLKTFFIHLLKTYTCFFFLIP 505
SS +L +F+ L++ + CFFF+ P
Sbjct: 50 SSGPFISLSFWFLSLVRGFVCFFFMFP 76
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 406 QTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGC 528
++ + N ++TD +NIF +F+ N + F + L I C
Sbjct: 71 KSSESNSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 198 IGEIIHLSKPDKNKNKNITIHTLKFLSNHL 287
+G I HL K D+N K ++TL F+ N L
Sbjct: 1251 LGFIHHLKKKDQNMEKVPVLYTLDFIWNTL 1280
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 385 FFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSI 519
+F +++T K FI KNIF F +FF F IL SI
Sbjct: 84 WFPRNKIRTAKYTPIDFIP--KNIFLQFQNVANLFFLFLVILQSI 126
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 162 KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTL 266
K DG+ S GE++H + ++ KN+ + I+ L
Sbjct: 301 KLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNL 335
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 367 ITTEPIFFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGCVQL*SL 546
+ T+ I+F + T + + + +++ F S ++N+ FF S G C+ L
Sbjct: 22 VITQLIYFLTSKKITN-LGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFL 80
Query: 547 F 549
F
Sbjct: 81 F 81
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 150 KSF*KH---DGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLVKKTKI 305
KSF KH D L ++ S+ ++ KP KN N + HTL + L++ +K+
Sbjct: 223 KSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTL-LSQDQLIELSKL 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,143
Number of Sequences: 5004
Number of extensions: 68635
Number of successful extensions: 223
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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