Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b05r
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.6  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    28   1.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   4.8  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    27   4.8  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   6.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   8.4  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 180 IINPVNWSQQELLLVDYMVIPKF 248
           I+ P NW+ +E++ +DY +I  F
Sbjct: 327 ILAPTNWAYREIIDIDYHIIENF 349


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 760 DTVIFIALNIYNKCNSVKCDSYMNMVYLVCFVKIYQSLV 876
           + ++F+   +Y +    KC SY N +  V  + +YQ L+
Sbjct: 885 EKLVFLFPELYKEMREQKCFSYKNFISCV-LISVYQGLI 922


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 844 LSKPCSCKNHILQNYICYIYSVQ*I*LC 761
           + K C C  HIL+N  CY  +V+   LC
Sbjct: 675 VKKRCLCGKHILENQPCYRENVRCGELC 702


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 883 YLGLKIDIFLQNILSKPCS 827
           +L  K+D+F+QN++  PC+
Sbjct: 465 HLEAKLDMFVQNVVKSPCA 483


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
 Frame = +1

Query: 634 PSQIHNLLELTSLLVNCSV*KVLFIL-----LWREIFNRFRAI*IMVDTVIFIALNIYNK 798
           P+ +  +LE     +N S    ++++     LW      FR + + V +++F    I   
Sbjct: 550 PNSMAGILESKKSEINSSFSLAVYVIVDFFSLWTTRHKFFRFLLLTVQSLVFA---IEKL 606

Query: 799 CNSVKCDSYMNMVYLVCFVKIYQSLVPNIKWS 894
            N     ++    Y VC    Y SL P   W+
Sbjct: 607 VNFFSMANFFLAFYFVCNATSYSSLNPYGNWA 638


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 353  STCVLCYLNLSEFIVQHCSMLIFFCKFLL*TNGTICLYILFLN 481
            S C+L Y  L  F  Q    +  F K LL     IC  I  +N
Sbjct: 1124 SVCILLYKGLPPFYRQKPGSIPAFSKSLLHRKVVICFLISVIN 1166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,817,778
Number of Sequences: 5004
Number of extensions: 82359
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)