Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b05r
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    27   0.31 
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    26   0.54 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    26   0.54 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    26   0.54 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.54 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   6.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.8  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 859 FLQNILSKPCSCKNHILQNYIC 794
           F+   +S  C+CK H+++ +IC
Sbjct: 21  FVTPTMSIKCNCKRHVIKPHIC 42


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 287 EIAHSLCCTLSNHKLWYNH 231
           EIAH+LC T    K+W+ +
Sbjct: 40  EIAHALCLTERQIKIWFQN 58


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 287 EIAHSLCCTLSNHKLWYNH 231
           EIAH+LC T    K+W+ +
Sbjct: 40  EIAHALCLTERQIKIWFQN 58


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 287 EIAHSLCCTLSNHKLWYNH 231
           EIAH+LC T    K+W+ +
Sbjct: 40  EIAHALCLTERQIKIWFQN 58


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 287 EIAHSLCCTLSNHKLWYNH 231
           EIAH+LC T    K+W+ +
Sbjct: 302 EIAHALCLTERQIKIWFQN 320


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 585 IFLGENFVSQLI--CKEFTITNSQL 653
           IFL EN ++QLI  C   + TN  L
Sbjct: 90  IFLNENEINQLITECSAISDTNVHL 114


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 188 PR*LVPTRVTVSRLHGYTKVCDWIMCNIMNVQFLKK*HSNNSINV 322
           P  LVP +  +S  +   KV +W+  N+  +  L    +N +IN+
Sbjct: 55  PGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDIL---INNATINI 96


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 215 TVSRLHGYTKVCDWIMCNIMNV 280
           T+ RL+  TK+  W +  + N+
Sbjct: 266 TIDRLYELTKIDKWFLHKMKNI 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,601
Number of Sequences: 438
Number of extensions: 5903
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)