Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17b03f
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 213 2e-56
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 75 1e-14
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.2
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 2.9
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 26 5.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 6.7
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 8.9
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 8.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 8.9
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 213 bits (521), Expect = 2e-56
Identities = 105/199 (52%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
Frame = +1
Query: 133 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNT 312
++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAAD+ H+NT
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINT 77
Query: 313 PAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNA 489
+ V G+ ++ L A+ ADVV+IPAGVPRKPGMTRDDLF TNASIVRD+A + +
Sbjct: 78 TSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETC 137
Query: 490 PKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVVRAATFVGEINGVDPTSV 669
P+A ++TNPVNSTVPI + L++ GV+ P + GVTTLD VRA+ F ++ +
Sbjct: 138 PEAKYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELL 197
Query: 670 AVPVIGGHSGITIIPILSQ 726
+PV+GGHSG TI+P+LSQ
Sbjct: 198 HIPVVGGHSGATIVPLLSQ 216
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 74.9 bits (176), Expect = 1e-14
Identities = 70/218 (32%), Positives = 100/218 (45%), Gaps = 9/218 (4%)
Frame = +1
Query: 127 GAKNFSTTSQRN--FKXXXXXXXXX--IGQPLALLLKQNPLVTRLALYDI-APVTPGVAA 291
G+K FS S R+ FK +G A L + L + + D+ G A
Sbjct: 4 GSKVFSNDSVRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAM 63
Query: 292 DLSHMNTPAKVSGHKGPEELS--AAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDI 465
DL+H A H+ L KDA VVI AG +KPG TR DL N SI ++I
Sbjct: 64 DLNH----AAPLSHETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEI 119
Query: 466 ALSIAQNAPKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGV-TTLDVVRAATFVGE 642
+ + AI+ + TNPV+ + LK G + RV+G T +D R +G+
Sbjct: 120 LREVTKYTKDAILLVATNPVD---VLTYATLKLTG-FPAERVIGSGTIIDTARFQYLIGK 175
Query: 643 INGVDPTSVAVPVIGGHSGITIIPILSQCQPA-LKLSD 753
+ G+DP SV +IG H G + + + S A L L+D
Sbjct: 176 LYGLDPQSVNADIIGEH-GDSELAVWSHASIAGLSLAD 212
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 483 LSNGQSNVTDNGSISVE*VITGHSRFTGYSCW 388
L NG + D + SV V+TGH+R CW
Sbjct: 43 LVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 577 DPNRVLGVTTLDVVRAATFVGEINGVD--PTSVAVP 678
D R LG+ D++R V E+NGV P S P
Sbjct: 835 DTLRTLGLKEGDIIRVMNHVNELNGVSTKPASAITP 870
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 111 PCCTKWCKELFHHITEEL*SGGRWCR 188
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 253 LYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAA 360
L + APV G A S + V+G GP ELS A
Sbjct: 12 LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 99 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 197
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 499 IVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLDVVRAATF 633
+VA ++ P+ +AS+++ ++DP ++ T RAA F
Sbjct: 307 LVAAVSAPIGIVSGVASKIMYGTAMWDPLQIANNWTSRGGRAAAF 351
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 64 RVYTCIFELFPPDPPD 17
RV T + LFPPDP D
Sbjct: 199 RVKTALSALFPPDPKD 214
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 235 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAI 363
++ RLALY+ A V P + + + + + SG+ +E SA +
Sbjct: 586 IIGRLALYNPAHVMPSLRKTIIQLLSDMEYSGNSRQKEESAQL 628
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,829
Number of Sequences: 5004
Number of extensions: 62828
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -