Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b03f
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   278   4e-75
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    34   0.096
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    31   0.68 
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    31   0.68 
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     29   4.8  
Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    28   8.3  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  278 bits (681), Expect = 4e-75
 Identities = 133/186 (71%), Positives = 158/186 (84%)
 Frame = +1

Query: 196 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDAD 375
           IGQPL LLLKQ+PLV  LALYD+   TPGVAADLSH+++ AKV+ H GP+EL AA+++AD
Sbjct: 40  IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTAHTGPKELYAAVENAD 98

Query: 376 VVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEV 555
           V+VIPAGVPRKPGMTRDDLFNTNA IVRD+A  IA+ +PKA++AIITNPVNSTVPIASEV
Sbjct: 99  VIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVNSTVPIASEV 158

Query: 556 LKKAGVYDPNRVLGVTTLDVVRAATFVGEINGVDPTSVAVPVIGGHSGITIIPILSQCQP 735
           LKKAGVYDP RV GVTTLDVVR+  FV E+ G D +   VPV+GGH+GITIIP+LSQ +P
Sbjct: 159 LKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGITIIPLLSQVKP 218

Query: 736 ALKLSD 753
           + K S+
Sbjct: 219 STKFSE 224


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 125 FCTARAAGFRARENIFVVC-LTCIYVYI*TIST*PSRP 15
           FC+ R   F  R  +F+ C LTC+Y  +  IST P+ P
Sbjct: 320 FCSKRIKNFGMRPTMFIGCFLTCLYCALVVISTPPTAP 357


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 226  QNPLVT-RLALYDIAPVTPGVAADLSHMNTPAKVS---GHKGPEELSAAIKDADVVVIPA 393
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 394  GV 399
             V
Sbjct: 1040 HV 1041


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 226  QNPLVT-RLALYDIAPVTPGVAADLSHMNTPAKVS---GHKGPEELSAAIKDADVVVIPA 393
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 394  GV 399
             V
Sbjct: 1040 HV 1041


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 346 PQVPCGR*PWLGCSCGKGRLRRRGSQALCRIKPAWSPEDSASVEGP 209
           P V C     +GCSC KG LR R  Q    + P   P   ++ E P
Sbjct: 187 PLVNCMEKCDIGCSCKKGFLRNRQGQC---VNPTECPATGSTDENP 229


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/73 (19%), Positives = 38/73 (52%)
 Frame = +1

Query: 433 FNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLD 612
           FN+  S++ +  +++A N+P A  + ++  +++ + +A+   K++   DP   + +  L 
Sbjct: 129 FNSKLSLITESTIAVAANSPDA--STVSKIIDNRLIVAASATKESPYRDPFPAVAIRNLP 186

Query: 613 VVRAATFVGEING 651
            +      G++ G
Sbjct: 187 GLNVEN-AGDLEG 198


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 163 SSSVMWWKSSLHHFVQQGRQV 101
           S  ++WWKS  +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/73 (19%), Positives = 38/73 (52%)
 Frame = +1

Query: 433 FNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLD 612
           FN+  S++ +  +++A N+P A  + ++  +++ + +A+   K++   DP   + +  L 
Sbjct: 129 FNSKLSLITESTIAVAANSPDA--STVSKIIDNRLIVAASATKESPYRDPFPAVAIRNLP 186

Query: 613 VVRAATFVGEING 651
            +      G++ G
Sbjct: 187 GLNVEN-AGDLEG 198


>Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical
           protein Y69H2.3d protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 349 APQVPCGR*PWLGCSCGKGRLRRRGSQALCRIKPAWSPEDSASVEGP 209
           APQV C     +GCSC  G +  R +Q +C +K A  P   ++ E P
Sbjct: 122 APQVNCLMACQVGCSCMDGFV--RNNQGVC-VKEAECPAIGSTDENP 165


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 592 LGVTTLDVVRAATFVGEI-NGVDPTSVAVPVIGGHSGITII 711
           LG+T+L  +    F+  +  G+ PT+ A+P+IG + G+TI+
Sbjct: 241 LGITSL--LSTTVFLMMVAEGMPPTAEALPLIGIYFGVTIM 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,166,468
Number of Sequences: 27780
Number of extensions: 388572
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)