Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b02f
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    30   0.36 
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    29   0.62 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   1.9  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   4.4  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    26   5.8  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    26   5.8  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   7.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   7.7  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -1

Query: 348 SLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQ 199
           SLQ Q G+ H Q+  R      QN+Q  R   R F  + S   LH RS+Q
Sbjct: 126 SLQLQGGDMHRQV-YRWQQEVDQNKQIRRGRSRSFSAKVSDPNLHLRSVQ 174


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 525 NIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLV 644
           N++++   K  E +   S +G+I     P  +DED N ++
Sbjct: 89  NLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEII 128


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +3

Query: 498  DADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPE 677
            D D+    + IVD+    +NE   + S++ S+S  E+   + +DG+   I+D+  E Q E
Sbjct: 1059 DNDISSQEIKIVDDYYISSNEHSTHASDLASVSSEEF---VIDDGSS-SIIDISDELQDE 1114


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 90  IKPVQIADIPIPKYESIDAGMYIIPDEVIQ---ELALAGIELSENV 218
           ++ + I + PIP  +++D+   IIP   ++   ++ +AGI    NV
Sbjct: 298 VRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNV 343


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -1

Query: 333 PGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQSRPRRVLE*LRRG 160
           P + +   +LRH LR  ++++ +   +RE    + +R ++    +++  +  E  RRG
Sbjct: 190 PQSEYELWKLRHLLRKKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDAEASRRG 247


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 534 DEPVEKTNEEIENDSEVGSISWVEYP--AELDEDGNGLVIVDLPIEAQ 671
           +E  EKT+ E +ND E+ +   +E    AE  +D + L  ++  IE Q
Sbjct: 133 EEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQ 180


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = +1

Query: 58  SHSLERRPPHQSNPSKSRISQYRN---TKA----STLECTSSPTKSFKN 183
           +H   RRPP Q +   ++  + +N   TKA    S++E T SP K  K+
Sbjct: 87  AHPRSRRPPRQISIDSAKKEETKNTGSTKAADTKSSVEATISPLKDTKS 135


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 561 EIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIE 665
           ++++D+E+G + W + P E D + + + + D   E
Sbjct: 457 DVDSDTEIGMLPWQQSP-EFDLENSAMELSDASAE 490


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 504 DLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDED 629
           DLQ     +  E ++  NE++E+  E+GSI  ++    +D D
Sbjct: 358 DLQEKMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLD 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,574
Number of Sequences: 5004
Number of extensions: 55568
Number of successful extensions: 254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)