Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b02f
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0152 - 26008495-26009074,26010555-26011361,26016536-260166...    33   0.28 
08_02_0657 - 19749835-19751942,19753123-19753561                       30   1.5  
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419     30   1.5  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     30   1.5  
01_02_0019 + 10262685-10262909,10263014-10263076,10263155-102633...    30   1.5  
05_03_0288 - 11653136-11654074,11655252-11655965                       30   2.0  
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250...    30   2.0  
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307...    29   2.6  
10_01_0194 + 2130274-2131725                                           29   2.6  
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467           29   2.6  
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662...    29   4.5  
07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469     29   4.5  
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055     29   4.5  
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196...    28   6.0  
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100...    28   6.0  
05_07_0140 - 27982037-27983794                                         28   6.0  
09_04_0541 + 18437075-18440062                                         28   7.9  
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235...    28   7.9  
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059...    28   7.9  

>05_06_0152 -
           26008495-26009074,26010555-26011361,26016536-26016657,
           26016860-26017462
          Length = 703

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = -1

Query: 549 FQLVHPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQL 370
           F + + +CS+G LVN    LE R       ++  H  P L    C+R L  +   RR + 
Sbjct: 239 FIIRNAQCSKGFLVNTFESLEPRVVNALRDSRCHHGGPALPPFYCIRPLVEKADERRDRA 298

Query: 369 EHRGFLRSLQSQP 331
           E    L  L  QP
Sbjct: 299 ERHECLAWLDRQP 311


>08_02_0657 - 19749835-19751942,19753123-19753561
          Length = 848

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 474 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAE 617
           D  +AP  + +L V  + +V +P  KT  E+E ++E  + +  E  A+
Sbjct: 769 DEEEAPATEPELPVGQLRLVAKPKTKTKAELEAEAEAAAKAKAEAEAK 816


>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
          Length = 464

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -3

Query: 268 KSTLSTGISMSK-IATLSTFSLNSIPAKASS*MTSSGMMYIPASMLSYFGIGISAIWTGL 92
           ++   TGIS+   +A     SL + PA AS  + ++ + ++PAS +S   +G   + +G 
Sbjct: 69  RALAGTGISLVVGVANGDIPSLAADPAAASRWLAANVLPFVPASTISVVAVGNEVLESGD 128

Query: 91  IDAAAA 74
              AAA
Sbjct: 129 ASLAAA 134


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 165  DEVIQELALAGIELSENVDNVAIFDIE-IPVDNVDFPVDSVNFVENVEAPVENADFPADS 341
            D  I ELA   +++  N D  AI +I+ I +D  +F  D +   + +    +N    A  
Sbjct: 1364 DAKITELAQTNLDIKNNADQRAIQNIQCINMDEAEFVTDDLK-SDCLAMHADNVQRDASL 1422

Query: 342  VSFVENLDAPVEDAD 386
               +E   A +E AD
Sbjct: 1423 TKNIEESSASLEGAD 1437


>01_02_0019 +
           10262685-10262909,10263014-10263076,10263155-10263316,
           10263407-10263589,10263676-10263806,10264251-10264419,
           10264524-10264653,10265702-10265898
          Length = 419

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 498 DADLQVAPVNIVDEPVEKTNEEIENDSEVGSIS 596
           +A+LQ    ++ ++PV   NEE  ND +V S+S
Sbjct: 376 EAELQDEFPHVQEDPVSHANEEFPNDEDVDSLS 408


>05_03_0288 - 11653136-11654074,11655252-11655965
          Length = 550

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 99  VQIADIPIPKYESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIP 251
           V ++   +P+ E +  G  ++P   ++ +A+ G+E+  N   V +F    P
Sbjct: 109 VMVSFFGLPEKEVVRIGKAVLPKFFLEGMAMEGLEVVRNAKKVVVFSPLFP 159


>02_01_0348 -
           2506007-2506909,2507003-2508120,2508230-2508883,
           2508920-2509046
          Length = 933

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 474 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSIS 596
           D+ D  VED D ++   N  +E  E+  +E ENDS   S S
Sbjct: 331 DDDDVEVEDVDEEIGEENAEEEEEEEGADEEENDSSDDSDS 371


>11_06_0176 +
           20929629-20929791,20929918-20930333,20930449-20930736,
           20931034-20931147,20931245-20931352,20931701-20931744,
           20933106-20933200,20934103-20934182,20934278-20934391,
           20934476-20934628,20934740-20934832
          Length = 555

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 120 IPKYESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVNFVE 296
           +P Y ++D    I PD   +EL ++ +E  E  D+ +  DI +     D   D + FV+
Sbjct: 173 LPTYVALDLAKSIEPDADKEELRMSVVEPIEKADDPSSHDIPVGSTKGDEYDDRICFVK 231


>10_01_0194 + 2130274-2131725
          Length = 483

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 320 ILNWSFDIFYEVYRINREIDVVNGNFNVKNRNVVYIFAQ 204
           +L W+ D+ + +  +NR I V   NF++  ++V  +F Q
Sbjct: 351 VLRWNLDVNFWISILNRCITVAEKNFSLYGKHVRSLFEQ 389


>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
          Length = 945

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 474 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDS---EVGSISWVEYPAELDEDGNGLV 644
           D+ D  VED D ++   N  +E  E+  +E ENDS      S S  +  ++L E G+   
Sbjct: 343 DDDDVEVEDIDEEIGEENAEEEEGEEGADEEENDSGDDSDSSSSSSDNSSDLSESGDSKT 402

Query: 645 I 647
           +
Sbjct: 403 V 403


>12_02_0035 -
           12563503-12564405,12564494-12565611,12565709-12566239,
           12566337-12567153
          Length = 1122

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 474 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDS 578
           D+ D  VED D ++   N  +E  E+  +E ENDS
Sbjct: 343 DDDDVEVEDIDEEIGEENAEEEEGEEGADEEENDS 377



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 474 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDS 578
           D+ D  VED D ++   N  +E  E+  +E ENDS
Sbjct: 520 DDDDVEVEDIDEEIGEENAEEEEGEEGADEEENDS 554


>07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469
          Length = 198

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 59  RTHWSGGRRINQTRPNRGYPNTEIRKHRRWNVHHPRRSHSRTRLG 193
           R  W G   + +TR  R +P       RRW  H PRR    T +G
Sbjct: 10  RWRWGGASSLARTRRRRLFP-----AWRRWIRHCPRRIRPETAVG 49


>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
          Length = 963

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 474 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDS 578
           D+ D  VED D ++   N  +E  E+  +E ENDS
Sbjct: 343 DDDDVEVEDIDEEIGEENAEEEEGEEGADEEENDS 377


>06_03_1180 +
           28218386-28218649,28218725-28219202,28219309-28219697,
           28219785-28220426,28220466-28221368
          Length = 891

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 474 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSIS 596
           D+ D  +ED D ++   N  +E  E+  +E ENDS   S S
Sbjct: 318 DDDDVELEDVDEEIGEENAEEEEGEEGADEEENDSSDDSDS 358


>06_03_1076 +
           27409107-27409204,27409731-27409835,27409915-27410032,
           27410180-27410230,27410328-27410419,27410558-27410657,
           27411018-27411137,27411227-27411295,27411468-27411514,
           27411597-27411652,27412293-27412333,27412570-27412675,
           27413891-27414023,27414096-27414645
          Length = 561

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 77  GRRINQTRPNRGYPNTEIR-KHRRWNVHHPRRSHSRTRLGRD*IERKCRQRCDF*H 241
           G R +    +RGY   E R K+R  N  + R+    +R GRD  E + R R D  H
Sbjct: 461 GERSSSRYDDRGYSKHESRGKYRDGNDDYRRQPGGGSRYGRDKYEGERRYREDDGH 516


>05_07_0140 - 27982037-27983794
          Length = 585

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -1

Query: 537 HPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRP 376
           HPR       N+RPQL  R   R  + +   R  + E  R  R  QN   H  P
Sbjct: 101 HPRFGPKWRFNQRPQLPQR---RDEEVEARRREAEKERARRERHFQNNRSHHHP 151


>09_04_0541 + 18437075-18440062
          Length = 995

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 79  PPHQSNPSKSRISQYRNTKASTLECTSSPT 168
           PP Q  P   R  Q+R TKAS +   ++ T
Sbjct: 82  PPQQPQPQTPRQRQHRETKASDVAAAAAST 111


>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
            17823948-17824061,17824145-17824297,17826928-17827071,
            17827162-17827516,17828574-17828741,17829522-17829751,
            17829916-17830049,17830686-17830749
          Length = 1163

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/92 (23%), Positives = 38/92 (41%)
 Frame = -1

Query: 546  QLVHPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLE 367
            Q+   +  Q +   ++ QL+ ++     Q QP  +  QL      R  QN+P     Q++
Sbjct: 975  QVQQQQQQQQQQQQQQQQLQLQQHALPVQQQPDQKYSQLPSSGDTRHEQNKPQKLESQMD 1034

Query: 366  HRGFLRSLQSQPGNRHSQLELRHFLRSLQNQQ 271
            H+  L   Q     +  Q+ L    +  Q QQ
Sbjct: 1035 HQSELVQQQQVYFQQQQQMYLMQQQQMYQQQQ 1066


>02_05_0740 -
           31404004-31404180,31404365-31405261,31405351-31405978,
           31405997-31406468,31406575-31407052
          Length = 883

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 483 DAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSIS 596
           D  VED D ++   N  +E  E+  +E ENDS   S S
Sbjct: 233 DVEVEDVDEEIGEENAEEEEGEEGADEEENDSSDDSDS 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,856,925
Number of Sequences: 37544
Number of extensions: 358195
Number of successful extensions: 1269
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)