Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17b01f
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    30   0.39 
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    29   0.68 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    28   1.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    26   4.8  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   4.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   4.8  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    26   6.3  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    26   6.3  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   8.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   8.4  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.4  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -1

Query: 347 SLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQ 198
           SLQ Q G+ H Q+  R      QN+Q  R   R F  + S   LH RS+Q
Sbjct: 126 SLQLQGGDMHRQV-YRWQQEVDQNKQIRRGRSRSFSAKVSDPNLHLRSVQ 174


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 524 NIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLV 643
           N++++   K  E +   S +G+I     P  +DED N ++
Sbjct: 89  NLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEII 128


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +2

Query: 497  DADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPE 676
            D D+    + IVD+    +NE   + S++ S+S  E+   + +DG+   I+D+  E Q E
Sbjct: 1059 DNDISSQEIKIVDDYYISSNEHSTHASDLASVSSEEF---VIDDGSS-SIIDISDELQDE 1114

Query: 677  DLEKAQL 697
               +  L
Sbjct: 1115 SSSRDSL 1121


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -3

Query: 726 SATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 592
           S++ S+  STS   S SS  +S   ST ++   SSS+S+ +S+ L
Sbjct: 277 SSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 726 SATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 598
           S+T S+ +S+S   S  S  +S   ST+TS   SSS  A  S+
Sbjct: 356 SSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 723 ATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYS 601
           +T S+  STS + S SS  ++   S+ +S   SSS+S+  S
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -3

Query: 726 SATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNS 613
           S++ S+  STS   S SS  +S   ST++S   SSS+S
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 726 SATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLIEP 583
           S++ S+  STS + S SS  ++   ++ +SP   SS+ +  ST L  P
Sbjct: 581 SSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP 628


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 726 SATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAG 607
           SAT +TG +T+ ++S  S  +S   S+  S   S+  +AG
Sbjct: 368 SATSATGSATTTSYSSDSSASSSSSSSHESSAASNGFTAG 407


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 89  IKPVQIADIPIPKYESIDAGMYIIPDEVIQ---ELALAGIELSENV 217
           ++ + I + PIP  +++D+   IIP   ++   ++ +AGI    NV
Sbjct: 298 VRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNV 343


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 714 STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 598
           S+  S++ + S SS  +S   +T TSP  SSS+S+  S+
Sbjct: 129 SSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSS 167


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -1

Query: 332 PGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQSRPRRVLE*LRRG 159
           P + +   +LRH LR  ++++ +   +RE    + +R ++    +++  +  E  RRG
Sbjct: 190 PQSEYELWKLRHLLRKKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDAEASRRG 247


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 533 DEPVEKTNEEIENDSEVGSISWVEYP--AELDEDGNGLVIVDLPIEAQ 670
           +E  EKT+ E +ND E+ +   +E    AE  +D + L  ++  IE Q
Sbjct: 133 EEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQ 180


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = +3

Query: 57  SHSLERRPPHQSNPSKSRISQYRN---TKA----STLECTSSPTKSFKN 182
           +H   RRPP Q +   ++  + +N   TKA    S++E T SP K  K+
Sbjct: 87  AHPRSRRPPRQISIDSAKKEETKNTGSTKAADTKSSVEATISPLKDTKS 135


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 560 EIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIE 664
           ++++D+E+G + W + P E D + + + + D   E
Sbjct: 457 DVDSDTEIGMLPWQQSP-EFDLENSAMELSDASAE 490


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 503 DLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDED 628
           DLQ     +  E ++  NE++E+  E+GSI  ++    +D D
Sbjct: 358 DLQEKMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLD 399


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -3

Query: 726 SATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAG 607
           S++ S+  S S + SKSS   S   S ITS  P+SS+S+G
Sbjct: 201 SSSSSSKSSASPSSSKSSSKFS-SSSFITSTTPASSSSSG 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,758
Number of Sequences: 5004
Number of extensions: 60243
Number of successful extensions: 294
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)