Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a24f
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    70   4e-13
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    28   1.7  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   3.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   5.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   5.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   6.8  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   9.0  

>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 34/99 (34%), Positives = 58/99 (58%)
 Frame = +1

Query: 460 RINQLNEKFEEEFGIKPNFTVKVPGRVNIIGEHIDYCGYPVLPMALEQSILIAVGLINEK 639
           R  +L   FE+++  KP+F  + PGRVNIIGEHIDY  + VLPMA++  ++++V   ++ 
Sbjct: 22  RYAKLLNSFEQKYHCKPDFFSRSPGRVNIIGEHIDYNYFSVLPMAIDVDVIVSVTTSDDA 81

Query: 640 DLRIRNTNSKYCKFQMDISKPEDFDIXPDEDGKPFWYNY 756
            + + NTN ++ +  +++  P D  +         W NY
Sbjct: 82  KVELNNTNPEFKEEILEL--PSDGAVIEINKTHHTWGNY 118


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 586 PMALEQSILIAVGLINEKDLRIRN-TNSKYCKFQMDISKPEDFDIXPDED 732
           P+      L    L +E D R  + ++S YC+ +   S  +DF+I PD D
Sbjct: 139 PIPFSSDTLKKTYLSSENDARYPSVSDSPYCESEGFSSFEDDFEIDPDTD 188


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 219 LFSVTAIECLFMNCGQ--STIRDNVINVKCDCE*SSVNIVYSFQSYQLAVRNEFINNTYT 392
           L  +T+    F +C +   +IR  V   K +CE  SV I  +    +LA+R    +N Y+
Sbjct: 381 LLDITSSVSSFQDCFEIAESIRSQV-REKTNCE-VSVGIGPNVLLARLALRKAKPHNVYS 438

Query: 393 ISIQN 407
           +SI+N
Sbjct: 439 LSIEN 443


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 123  RFQRTENLRIFLADHRYLI*FLSFSNLSYNW*LFSVTAIEC 245
            +F R E+LR  LA + +    L+ S+ SY+  + S+ A+EC
Sbjct: 1546 QFSRLEHLRKQLAQNTFNENILNESSASYHVWISSLFALEC 1586


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 325 TLFIRSSHINWQLGTNLLITRIQFQFKMNNQRHDEIPILKTTADTRIN 468
           T F+R     W + TNL+I R++      + +  +   L+ T D+  N
Sbjct: 282 THFLRLIEFYWGVPTNLIIKRVEVVCSSISYKESDKKELEKTVDSLFN 329


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 650 ILKSFSLINPTAIKILCSKAIGS-TGYPQ*S-ICSPIILTR 534
           I+KS S+++PTA +I C    G  T Y +   + SP IL++
Sbjct: 740 IIKSISIVSPTANRIACLTESGEVTVYSKKGPVWSPKILSQ 780


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 723 WXYVKVFWLRNIHLKF 676
           W Y K FWLR + L F
Sbjct: 419 WQYGKYFWLRRVSLIF 434


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 31  SCSDSVAFTYSWRSADARGGCFVEVMFN*IRV 126
           SC DS+  T  W S +    C  + +F+  RV
Sbjct: 312 SCHDSIVSTMHWASTELLWSCSKDGIFSQTRV 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,675
Number of Sequences: 5004
Number of extensions: 63130
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)