Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a24f
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624...    77   1e-14
01_01_0097 - 741881-742977,743100-743320,743438-744156                 30   2.3  
07_03_0394 - 17633753-17636788                                         29   5.4  
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109...    28   7.1  

>03_06_0566 +
           34760991-34761186,34761283-34761455,34762370-34762416,
           34762546-34762640,34762734-34762816,34763331-34763399,
           34763874-34764059,34764374-34764508,34764774-34764908,
           34765148-34765218,34765393-34765470,34765626-34765767,
           34765940-34766050
          Length = 506

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
 Frame = +1

Query: 451 ADTRINQLNEKFEEEFGIKPNFTVKVPGRVNIIGEHIDYCGYPVLPMALEQSILIAVGLI 630
           A  R+ +L +KF   +  +P    + PGRVN+IGEHIDY GY VLPMA+ Q +++A+   
Sbjct: 39  ARLRLARLADKFHAVYAARPALFARSPGRVNLIGEHIDYEGYSVLPMAIRQDMIVAIRRA 98

Query: 631 NEKDLRIRNTNSKY--CKFQMDISKPEDFDIXPDEDGKPFWYNY 756
             K++R+ N + KY  C +  D  K  + DI   + G  F   Y
Sbjct: 99  EGKEVRVANVDDKYPICVYPADPDK--EIDIKNHKWGHYFMCGY 140


>01_01_0097 - 741881-742977,743100-743320,743438-744156
          Length = 678

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 249 FMNCGQSTIRDNVINVKCDCE*SSVNIVYSFQSY 350
           F+NC Q+ +R+N + V  DC  +S + VY F S+
Sbjct: 134 FVNCSQA-VRNNSVYVPVDCLSTSSSFVYVFGSW 166


>07_03_0394 - 17633753-17636788
          Length = 1011

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = +1

Query: 415 QRHDEIPILKTTADTR---INQLNEKFEEEFGIKPNFTVKVPGRVNIIGEHIDYCG--YP 579
           +R D  P+L    D R   +  LN+  E++F  K    + + G  +++ E   YC    P
Sbjct: 527 RRADHKPVLPAWFDLRRPGLIDLNQLKEDKFYAKVQLRICLEGGYHVLDESTQYCSDLRP 586

Query: 580 VLPMALEQSI-LIAVGLINEKDLRIRNT 660
            +    +  I L+ VG+++   L    T
Sbjct: 587 TMKQLWKPPIGLLEVGILSANGLNPTKT 614


>06_03_1297 +
           29110432-29110542,29110613-29110804,29110893-29110976,
           29111115-29111191,29111410-29111476,29111640-29111697,
           29111823-29111890,29111981-29112043,29112549-29112651,
           29112685-29112845,29112934-29113053,29113300-29113356,
           29113646-29113809,29113896-29114055,29114720-29114803,
           29115074-29115196,29115368-29115498,29115577-29115658,
           29115876-29115963,29116143-29116186,29116264-29116387,
           29116450-29116537,29116649-29116849,29116894-29117104,
           29117383-29117454,29117587-29117790,29117959-29118087
          Length = 1021

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 514 FTVKVPGRVNIIGEHIDYCGYPVLPMALEQSILIAV 621
           +  + PGR++++G   DY G  VL + L ++  +AV
Sbjct: 499 YIARAPGRLDVMGGIGDYSGSLVLQLPLREACHVAV 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,928
Number of Sequences: 37544
Number of extensions: 319073
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)