Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a24f
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003739-5|AAK84629.2|  422|Caenorhabditis elegans Temporarily a...    64   1e-10
Z82266-1|CAB05178.2|  626|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein pro...    29   4.8  
U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein pro...    29   4.8  
AC006627-2|AAT68899.1|  169|Caenorhabditis elegans Abnormal cell...    29   4.8  
AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell...    29   4.8  
U80448-9|AAB37822.2|  577|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AF003739-5|AAK84629.2|  422|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 96 protein.
          Length = 422

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 32/78 (41%), Positives = 44/78 (56%)
 Frame = +1

Query: 469 QLNEKFEEEFGIKPNFTVKVPGRVNIIGEHIDYCGYPVLPMALEQSILIAVGLINEKDLR 648
           QL E+F + +GI+P   V  PGRVN+IGEHIDY  Y V PMA++ +  I     +   + 
Sbjct: 6   QLAEQFVKLYGIEPEVRVTCPGRVNLIGEHIDYHDYGVFPMAIDAATTILAAKNDTNSIV 65

Query: 649 IRNTNSKYCKFQMDISKP 702
             N +SKY  +   I  P
Sbjct: 66  FSNFDSKYESWSSPIPCP 83


>Z82266-1|CAB05178.2|  626|Caenorhabditis elegans Hypothetical
           protein F23B2.3 protein.
          Length = 626

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 427 EIPILKTTADTR-INQLNEKFEEEFGIKPNFTV 522
           EIPIL    D + +N+ NE+  E   I PNFTV
Sbjct: 178 EIPILLGNTDQQSLNKGNEELREYQSIHPNFTV 210


>U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 240 ECLFMNCGQS-TIRDNVINVKCDCE 311
           +C  + CG   +IR  V+ VKCDCE
Sbjct: 293 DCDRLCCGNGFSIRHEVVRVKCDCE 317


>U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 240 ECLFMNCGQS-TIRDNVINVKCDCE 311
           +C  + CG   +IR  V+ VKCDCE
Sbjct: 293 DCDRLCCGNGFSIRHEVVRVKCDCE 317


>AC006627-2|AAT68899.1|  169|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform b protein.
          Length = 169

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 240 ECLFMNCGQS-TIRDNVINVKCDCE 311
           +C  + CG   +IR  V+ VKCDCE
Sbjct: 114 DCDRLCCGNGFSIRHEVVRVKCDCE 138


>AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform a protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 240 ECLFMNCGQS-TIRDNVINVKCDCE 311
           +C  + CG   +IR  V+ VKCDCE
Sbjct: 293 DCDRLCCGNGFSIRHEVVRVKCDCE 317


>U80448-9|AAB37822.2|  577|Caenorhabditis elegans Hypothetical
           protein F59A3.8 protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 582 HWISTIVDMFSNYINTSR-HFNSEVR-LNP 499
           HW+  + D+FS+Y  TS  H N E + LNP
Sbjct: 267 HWLVKLKDLFSHYQGTSAVHKNGEFQLLNP 296


>Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical
           protein C30F2.2 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 280 SRIVDCPQFINKHSIAVTLNNYQLYDKLLNERNYI 176
           S+IV CP    K++   T+ NYQL D  L  R  +
Sbjct: 39  SKIVSCPLCKRKNAFFGTVINYQLLDSCLAIRQLL 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,326
Number of Sequences: 27780
Number of extensions: 335858
Number of successful extensions: 779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)