Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a22r
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily ass...    29   6.0  
AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine r...    29   6.0  
U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine rece...    28   8.0  

>U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 127 protein.
          Length = 862

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 536 EFKSTKYKRRTISKLTIYINELKRLGFISQNGNKSVDIVHYMKIININF 390
           EF+  K  R  +S L+ Y+ +L+  GF+    N+ V   +++ + N+N+
Sbjct: 143 EFRYIKLLRY-LSNLSFYLTDLQNCGFLKDIENRLV-FFNFVTLFNVNY 189


>AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein47 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +1

Query: 322 SKFVILTTHLL*YSVQLVYKNHRKFILIIFI*CTISTDLFPFWLMKP 462
           S F+  TT LL       + N R F+L+  + CTI TDL   ++M+P
Sbjct: 22  SFFLNFTTILLIIFKSYKFNNFRFFVLVFQVTCTI-TDLHLNFIMQP 67


>U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein48 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +1

Query: 322 SKFVILTTHLL*YSVQLVYKNHRKFILIIFI*CTISTDLFPFWLMKP 462
           S F+  TT LL       + N R F+L+  + CTI TDL   ++M+P
Sbjct: 22  SFFLNCTTILLIIFKSYKFNNFRFFVLVFQVTCTI-TDLHINFIMQP 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,965,712
Number of Sequences: 27780
Number of extensions: 310396
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)