Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a22r
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   8.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 316 LFFNINYIRLS*PGTMT 266
           LF N NYI L  P T T
Sbjct: 622 LFINNNYINLVRPNTFT 638


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 717 LHLNKIANASMISASKDNIH 776
           +H+ K A++ ++  S DNIH
Sbjct: 394 MHMLKNADSQLLVISDDNIH 413


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 75  FFFLLNHNF 101
           F+F+LNHN+
Sbjct: 231 FYFMLNHNY 239


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 75  FFFLLNHNF 101
           F+F+LNHN+
Sbjct: 231 FYFMLNHNY 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,960
Number of Sequences: 438
Number of extensions: 4122
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)