Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17a22f
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 62 6e-11
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 62 8e-11
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 54 3e-08
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 40 4e-04
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 28 1.7
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 27 3.0
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 3.0
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 62.5 bits (145), Expect = 6e-11
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = +3
Query: 180 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDG---VFYEFEGRKYCEQDFQVL 350
C RCG F+ E ++ G +WH +CF C +C + + +GR C
Sbjct: 19 CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSS----- 73
Query: 351 FAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVC 515
A C C + + + ++H CFRC +C ++ D+ F + C+ C
Sbjct: 74 CAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 62.1 bits (144), Expect = 8e-11
Identities = 44/172 (25%), Positives = 65/172 (37%), Gaps = 2/172 (1%)
Frame = +3
Query: 180 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEFEGRKYCEQDFQVLFAP 359
C CG +I++++G+ H CF C C + FY EG+ YC D+ F+P
Sbjct: 258 CHSCGGSLRAG-RIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFSP 316
Query: 360 CCAKCGEFVIGRVIKAMNSNWHPACFRCEECN-VELADAGFIKHAGRALCHVCNARIKAD 536
C C + + + N +H C C+ V + I C C D
Sbjct: 317 RCKHCKTPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTC-----YD 371
Query: 537 GLQNYMCHKCHGVIDGEPLRYRGEVYHGYHFTCATCGVEL-DHTAREVKNRP 689
C KC I G ++ YH +TC C L D ++N P
Sbjct: 372 NKYAVKCKKCRKPILGISVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTP 423
Score = 59.7 bits (138), Expect = 5e-10
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +3
Query: 180 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEFEGRKY-CEQDFQVLFA 356
C C E ++ V+ N + +H N CA C +F + + Y C+ + +A
Sbjct: 318 CKHCKTPIE--DQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYA 375
Query: 357 PCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNA 521
C KC + ++G +K + +H C+ C CN L D G+ +C C A
Sbjct: 376 VKCKKCRKPILGISVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430
Score = 34.3 bits (75), Expect = 0.019
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Frame = +3
Query: 507 HVCNARIKADGLQNYMCHKCHGVID-GEPLRYRGEVYHGYHFTCATCGVELDHTAREVKN 683
H + G CH C G + G + G+ H F C TC L+H +
Sbjct: 242 HTSTKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYRE 301
Query: 684 RPGYAANDVNNLFCLRC 734
Y D + F RC
Sbjct: 302 GKFYCHLDYHEQFSPRC 318
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = +3
Query: 171 NMYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMF-PDGVFYEFEGRKYCEQDFQV 347
++ C CG + + + +H F C+ C+ +F P+ +YE+EG+ YC +
Sbjct: 177 DLLCASCGMALRGY--YITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYST 234
Query: 348 LFAPCCAKCGEFVIGRVIK----AMNSNWHPAC 434
LFA C C ++ + ++ ++ NWH C
Sbjct: 235 LFAARCCGCDGPILRQFVEVYRNGVSQNWHVPC 267
Score = 51.2 bits (117), Expect = 2e-07
Identities = 25/94 (26%), Positives = 42/94 (44%)
Frame = +3
Query: 363 CAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADGL 542
CA CG+ + G+ ++A+ + +H CFRC +CN +A F V
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRR 175
Query: 543 QNYMCHKCHGVIDGEPLRYRGEVYHGYHFTCATC 644
+ +C C + G + + +H HFTC+ C
Sbjct: 176 LDLLCASCGMALRGYYITALNKKFHIEHFTCSLC 209
Score = 48.4 bits (110), Expect = 1e-06
Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 7/159 (4%)
Frame = +3
Query: 180 CTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC-----FRMFPDGVFYEFEGRKYCEQDFQ 344
C CG + + V + G ++H CF C C + FP + CE D+
Sbjct: 116 CASCGQVI--SGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYF 173
Query: 345 VLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEEC-NVELADAGFIKHAGRALCHVCNA 521
CA CG + G I A+N +H F C C V + + ++ G+ CH +
Sbjct: 174 RRLDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYS 233
Query: 522 RIKADGLQNYMCHKCHGVIDGEPLR-YRGEVYHGYHFTC 635
+ A C C G I + + YR V +H C
Sbjct: 234 TLFA-----ARCCGCDGPILRQFVEVYRNGVSQNWHVPC 267
Score = 29.5 bits (63), Expect = 0.55
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 552 MCHKCHGVIDGEPLRYRGEVYHGYHFTCATC 644
+C C VI G+ +R G +YH F C C
Sbjct: 115 ICASCGQVISGQYVRALGNIYHLECFRCHDC 145
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 39.9 bits (89), Expect = 4e-04
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 1/123 (0%)
Frame = +3
Query: 150 LATMSLDNMYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQC-FRMFPDGVFYEFEGRKY 326
L T S +C +C + P+ V G+ WH++CF C C ++ P + + +K
Sbjct: 14 LETPSERTCFCIKCWESV-PSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQK- 71
Query: 327 CEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALC 506
Q F L C C I NS + C C C + F K G+ C
Sbjct: 72 --QIFCKLCVDICNGCST-PICEFNAVSNSQANHPC--CSNCRAFINSNAFGKFKGQHYC 126
Query: 507 HVC 515
C
Sbjct: 127 LPC 129
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 27.9 bits (59), Expect = 1.7
Identities = 24/104 (23%), Positives = 46/104 (44%)
Frame = +3
Query: 408 MNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADGLQNYMCHKCHGVIDGE 587
MNS A F CE C + + ++ I H +++ H+ +++ ++ Q ++ + +
Sbjct: 62 MNSKRDEAGFACEVCQIYIPNSKKINHF-KSMTHLLSSQHISNKFQPHL-------LKPK 113
Query: 588 PLRYRGEVYHGYHFTCATCGVELDHTAREVKNRPGYAANDVNNL 719
L YR +G+ T G+ L++ R R ND L
Sbjct: 114 SLGYRVLSQYGWSPQGDTAGLGLENQGRRAPVRAFRVKNDTIGL 157
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 138 KMPGLATMSLDNMYCTRCGDG--FEPNEKIVNSNGELWH 248
K+ AT S+ N +CT+C D F ++I+ ++ E H
Sbjct: 53 KLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLH 91
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = +3
Query: 621 YHFTCATCGVELDHTAREVKNRPGYAANDVNNLFCLRCHDKMGI 752
+HF C + D VK +P + ++N LR K +
Sbjct: 427 FHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNV 470
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,428,725
Number of Sequences: 5004
Number of extensions: 76408
Number of successful extensions: 255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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