Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a21f
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.65 
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   2.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.6  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   4.6  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   4.6  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   6.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.0  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 360 INVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPE 470
           I+ N P+  A+ P+  E + EEPLP    LP    PE
Sbjct: 80  ISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPE 116


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 401 NGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKS-RSDGDGLVGV 225
           NG S +       ++D+   S +   D    +FN+ R  R     VN   RSD D L+G+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRE-RFLTEHVNMDERSDDDFLLGL 252

Query: 224 NKSRSNRDGH 195
             S S+ D H
Sbjct: 253 ISSDSSVDDH 262


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
 Frame = -3

Query: 518 FGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGS 339
           FG +  G L G RN      G+G   + G  +FG   N     G    T      L  GS
Sbjct: 59  FGSNTNGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ-SNTPAFGGTNNATNPSGGGL-FGS 116

Query: 338 AISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVG--VNKSRSNRDGHVGVNKSRSN 168
             +  +++ GT  +  SN  G  G   S+  G GL G     + +N  G  G   S +N
Sbjct: 117 NTANNNANTGTSFSFGSNA-GSTGFG-SQGTGGGLFGSSTTPATTNAFGTSGFVSSNAN 173


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 240 ISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIII 362
           +S G  + D + P   G A++  A   V+GAD  P++  ++
Sbjct: 164 VSSGGVMADLWCPAQRGTALIFYAFFVVSGADFGPIISSLV 204


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 467 RKYG-SGENNNFGQRLFGNVLN--INGISGNLGRTVHVDDDLDEGSA 336
           R+YG  G N +    L   ++N  + G   +L RTV+V+ D+DE  A
Sbjct: 461 RRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHL-RTVYVEHDIDESEA 506


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 366 VNRPSEIAADPVDVEDIAEEPLPEVVILPTPV 461
           ++ P++ A+  V  E   E+P+P  V+ P PV
Sbjct: 200 LSSPTQGASSNVTPESPPEKPIPSFVLSPPPV 231


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 545 GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNING 396
           GT  Y  + FG+ + G +      DF     G +N + ++  GNV  ++G
Sbjct: 762 GTMPYNNNKFGQPQQGYMSQSGFNDFPPIFGGHSNVYNRQQPGNVSGMSG 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,256
Number of Sequences: 5004
Number of extensions: 47183
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)