Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17a19f
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 31 1.3
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 31 1.3
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 30 1.8
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 30 2.4
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737... 29 5.4
09_02_0406 - 8629287-8629304,8629384-8629865,8629977-8630291,863... 29 5.4
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485 28 7.2
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 28 7.2
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 28 9.5
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 28 9.5
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 178 GGAIAPINYHPYLAGLLIDINELQSPAACGGSIL 279
GGA+AP+ + +L++ + SP+ACGG L
Sbjct: 482 GGAVAPVPTWTLQSRMLMNGTSMSSPSACGGVAL 515
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Frame = +3
Query: 273 DPYPCQHLNCSSLLVRWKKSCSTFHCRTGN-----PIPVPWWLKDSSV 401
+P L +W C H R+ N P P+PWW + SSV
Sbjct: 555 EPQTSHKAELMELRRKWGILCQRVHSRSHNDQASVPSPMPWWCRPSSV 602
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 76 ANEEFVGWLEKVGIKTAAKIKQAEQHQ----IFMQRIVGGAIAPINYHPYLAGLLIDINE 243
A+ F+G+ G+ AAK+ + Q +F+QR GG ++ + Y A + +IN+
Sbjct: 320 ADPTFLGYFIDKGVSAAAKVVRKAYPQEKVGVFVQRGRGGPLSVVEYSEMDAAMTTEINQ 379
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 667 YGNVVLDSNICTSGVGGVGICRGDSGGPL 753
YG+ V GV +CRGDS GPL
Sbjct: 66 YGSAAGSFGAAPDAVYGVALCRGDSKGPL 94
>10_04_0002 -
7372425-7372601,7372697-7372780,7372859-7373010,
7373229-7373324,7373406-7373554,7373723-7373788,
7373925-7373994,7374106-7374236,7376464-7376471,
7377946-7378002
Length = 329
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 556 AVAAGYGRYSDVIN-PTTNTMARNVFLQTISLETCRGYYG 672
+V G+GR S V+ PT N A N F +S T R Y+G
Sbjct: 176 SVIKGFGRGSKVLGIPTANLPAEN-FSDVLSEHTSRVYFG 214
>09_02_0406 -
8629287-8629304,8629384-8629865,8629977-8630291,
8630381-8630576
Length = 336
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 95 DGSKKLALKRLQRLSKRNNTKYLCSASLGELLRQSITIHIWQV 223
DG+ K L L+++++R +T+ LC LLR S H+W V
Sbjct: 4 DGTLKSRLILLRKVARRLSTRDLCEEFC--LLRISPLAHVWDV 44
>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
Length = 483
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 328 FFHRTSNELQLRCWQG*GSIRRTRPVI 248
FF RT NEL + QG SIR T V+
Sbjct: 169 FFWRTENELDIGSGQGTSSIRSTSSVL 195
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 179 PTMRCINIWCCSACLIFAAVLM 114
P +R WC + CL+F A +M
Sbjct: 600 PVLRYFKFWCSTPCLVFEASVM 621
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 752 NGPPESPRQIPTPPTP 705
N PP PRQ P PP P
Sbjct: 423 NAPPHHPRQEPAPPHP 438
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 135 NLCSRFNANFFEPSYKFFVGATFTTCVGHKAQNEKH 28
N SRF NFF+P++ + TF + V + E+H
Sbjct: 9 NKTSRFRINFFDPAFVLLL--TFISPVNSCTEQERH 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,312,524
Number of Sequences: 37544
Number of extensions: 553478
Number of successful extensions: 1793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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