Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a16f
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0547 - 26152892-26153194,26153248-26153329,26153349-261537...    29   4.4  
11_01_0446 + 3462820-3464265                                           29   5.9  
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    29   5.9  

>04_04_0547 -
           26152892-26153194,26153248-26153329,26153349-26153707,
           26154366-26154404,26154998-26155168,26155651-26155725,
           26156858-26157055,26157208-26157402
          Length = 473

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/90 (20%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +1

Query: 442 KRMRWQIMKLPHTQFSTITHFS*LLSS*AVSTFCVHSHLQLITLCLSRLHLDFLLYSPQE 621
           K++ W +  +P T    +T++S L+++  +ST+     L  ITL +     +FL+     
Sbjct: 78  KKLAWALFNVPRTSLELLTYYSRLVAT--LSTYM--KDLPSITLSMLEDEFNFLINKKPS 133

Query: 622 PSEDGSL-MRHVIQTVLILNILDILWQLKI 708
            S+  +  + H  +   +  + ++L ++++
Sbjct: 134 SSDCSTAGLSHYHEDFAVAVVDEVLEEIRV 163


>11_01_0446 + 3462820-3464265
          Length = 481

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 201 IPIWLFWRVHSLEISTAIIWFILVTAAS 284
           +P+WL W +H    ++ I+W+ + ++A+
Sbjct: 148 VPLWLMWSIH----ASRIVWYYITSSAA 171


>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 524  QDDNSQEKCVIVEN*VCGSFIICHLILFPQDSFVLFFSAHFFIISKLPGH 375
            +D N +    + E  V G  + C     P DSF   F   + ++S +P +
Sbjct: 953  EDSNKKSSPGLFEQIVTGLTVACKAGPLPADSFTFVFPVLYHVLSTVPAY 1002


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,993,247
Number of Sequences: 37544
Number of extensions: 397505
Number of successful extensions: 895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)