Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a14r
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    29   0.56 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    27   3.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   6.9  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   6.9  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 495 SFSSTNSFVMKLAHFWALSFVTFXXXXSAVY 403
           SFS+    V+ L +FW L FV F      VY
Sbjct: 186 SFSNFKELVISLTYFWGLLFVIFLLGNGFVY 216


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 502 YFFMLFSLCINISFTLALFYKNINYL-FDNIPKLSAIVFKF 621
           +FF+LF L  + SF+   F   I  + F + P L  + F F
Sbjct: 120 FFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 268 VHTKKDKVVKIYKFNIS*LNNNCIQM*SIQTGWQELDERSRESSL 402
           V  K D V+K+ +  +S +N+ CI+    Q G   L ER R+S+L
Sbjct: 40  VEEKFDAVIKLDEKQLSEMNDWCIE----QHGKSGLTERCRQSNL 80


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 433  HFFIVIFSRLLGTTLGFSHPTLASQSVLTTFEYNYY 326
            H F  +F R+L TT+  SHP  A+      +E NY+
Sbjct: 2187 HLFTKVFERVLSTTI--SHPEEATNE----WELNYF 2216


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = -1

Query: 629 LLANLKTMALSFGMLSNK*FIF-L*NNARVKEMLIHKLNNMKK*DIVFQV--QIVLS*SW 459
           +++NL    LS+G+LS++ F F     A V     +KL+   +   +F     + LS + 
Sbjct: 100 MISNLIGNLLSYGILSSRIFFFGFGQGAMVALYSCYKLSTKYQLGGIFSFGGTLPLSITL 159

Query: 458 PTFG-HCPLSLFHR--HLQPSTRDDSRL 384
           P    H P+ LF +  H   S  ++SRL
Sbjct: 160 PNHPFHVPVYLFEKRLHCSCSEYEESRL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,464
Number of Sequences: 5004
Number of extensions: 51686
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)