Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a14f
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center...    28   5.3  
AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center
           kinase family protein2 protein.
          Length = 829

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 386 TENKTTFFFNSVILPRIPIAICW*NSFSQTLLKLGFSGDTVY 511
           +E+  T FF   ++P++P+  C+     +T LK+  +   V+
Sbjct: 448 SEDGLTTFFGMPLIPKVPMGACFSKVMDRTELKINCAASWVH 489


>AL117200-9|CAB60586.1|  807|Caenorhabditis elegans Hypothetical
           protein Y50E8A.16 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 226 TAEDDDEKVTKDNAQKWANFMTKLFVLEKLCLI 128
           T E+D++ V+K+  +K    +T L+ + KLC +
Sbjct: 196 TDEEDNDAVSKEEKEKRLPLLTHLWQIVKLCSV 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,595
Number of Sequences: 27780
Number of extensions: 305374
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)