Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a07r
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   6.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.7  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 824 VGRGVAHDEYIPYTIKNGKLYYNEEESDIRGGKI 723
           V +   +D  I   + NG+L Y E   D+ GG++
Sbjct: 569 VVQSAINDMQIVVALSNGELVYFEMSDDVEGGQL 602


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 89   NYSLIIGLKFIISFINVNSTYYHTTSQVL--KKNIKSMIIKY 208
            N+S+    K ++SF+  ++ YY +T   +   KN + +++ +
Sbjct: 2546 NFSISTSSKSVVSFLEQSTVYYRSTGMTIMCPKNHEKVLVLF 2587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,598,963
Number of Sequences: 5004
Number of extensions: 73185
Number of successful extensions: 183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)