Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a07r
         (940 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0255 - 3395548-3396129,3396203-3397834                           33   0.25 
06_03_1390 - 29831098-29831514,29831613-29831735,29832238-298325...    31   1.7  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   4.0  
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    29   7.1  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           29   7.1  
03_02_0578 + 9603118-9605633,9605766-9605781                           29   7.1  
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217...    28   9.3  

>04_01_0255 - 3395548-3396129,3396203-3397834
          Length = 737

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 626 LVWPENETEEARDEIEEKNTKARRASGPKQPDP 528
           L +P  + EE + E EEK  K ++ +  K+PDP
Sbjct: 452 LAYPVEDVEEKKKEKEEKKKKKKKGTAEKKPDP 484


>06_03_1390 -
           29831098-29831514,29831613-29831735,29832238-29832501,
           29833313-29833654
          Length = 381

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 746 ILLHYSRVSRSLWCKVYIHHEQHLFLLYQKYPNRLL*YGLHSRRHQILSW 895
           +L H + V    +C V     +H  L+Y+  PN+ L   L +R H  LSW
Sbjct: 128 VLEHPNLVRLVGYCAVDSETSKHRLLVYEFMPNKSLDDHLFNRAHPPLSW 177


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 9/33 (27%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +3

Query: 792 YIFIMSNTSSYFIKNIQ--IGYYSMVSIQDDIK 884
           ++++++ +SSY+++NI+   GY +++ + D  K
Sbjct: 163 FVYVLTTSSSYYVQNIEPSCGYLAVIPVDDRTK 195


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 614 ENETEEARDEIEEKNTKARRASGPKQPDPYVMDESSV 504
           E ETE A+D  +EK  K  +    K+    V+DE  V
Sbjct: 340 EGETEGAKDSKQEKKVKKEKKEKKKKKKVEVVDEGDV 376


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 260 NVFFEFEKATQFLLNLNSTFLSHKKKTFQYLLFFK*LS-ILHGKHNTQ 400
           NVF    ++TQ   + N+    H K  F  + FFK    ++ GK NT+
Sbjct: 44  NVFTLGMRSTQLSESFNNDLKIHFKSDFDIIRFFKHFERVVQGKRNTE 91


>03_02_0578 + 9603118-9605633,9605766-9605781
          Length = 843

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -3

Query: 788 YTIKNGKLYYNEEESDIRGGKIKVEFIKGYRDNPKINALYVMTGTIDEVPKLPPLVWPEN 609
           YT KNG     E   +I G  + + F    +    +NA+ V++   + +    P+V P N
Sbjct: 141 YTPKNGTAVVREFSVNITGRALVIAFTPTGKKVAFVNAIEVVSHPDELIGDTAPMVNPRN 200

Query: 608 ETE 600
           +++
Sbjct: 201 QSQ 203


>01_05_0174 +
           18919759-18920265,18920381-18920443,18921060-18921761,
           18922934-18923068,18923391-18923474,18924095-18924151,
           18924290-18924376,18924963-18925205
          Length = 625

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 611 NETEEARDEIEEKNTKARRASGPKQP 534
           NE EE R+E + +  + RR   PK+P
Sbjct: 84  NEEEERREETQTRRRRRRRGRKPKRP 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,891,783
Number of Sequences: 37544
Number of extensions: 385209
Number of successful extensions: 945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)