Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a07r
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.57 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   7.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   7.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 510 AFIHNIWVWLFWPTSTS 560
           A I  I++WLFWP+  S
Sbjct: 213 AMIGTIFLWLFWPSFNS 229


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 271 KKYITISIYDLRFKLALISKLVLYNH 194
           KKY   ++ +L F L  ++K V Y H
Sbjct: 46  KKYFEQTLNELNFNLNYVNKGVTYKH 71



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 110 LKFIISFINVNSTYYHTTSQVLKKNIKSMI 199
           L F ++++N   TY HT  ++    IK+ +
Sbjct: 56  LNFNLNYVNKGVTYKHTIIEMDSNPIKTAL 85


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 107 GLKFIISFINVNSTYYHTTSQVLKKNIK 190
           GLK I+ F+  +++  H   Q+  KNI+
Sbjct: 113 GLKIILDFVPNHTSDQHEWFQLSLKNIE 140


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 107 GLKFIISFINVNSTYYHTTSQVLKKNIK 190
           GLK I+ F+  +++  H   Q+  KNI+
Sbjct: 113 GLKIILDFVPNHTSDQHEWFQLSLKNIE 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,502
Number of Sequences: 438
Number of extensions: 5463
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)