Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17a07f
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23646-2|AAK67235.1| 304|Caenorhabditis elegans Hypothetical pr... 145 4e-35
U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical pr... 31 0.90
U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical pr... 31 1.2
U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical pr... 30 2.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 2.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 2.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 2.8
Z81510-4|CAB04164.1| 839|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z75552-6|CAA99939.1| 332|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 28 6.4
AF016451-12|AAB65994.1| 317|Caenorhabditis elegans Hypothetical... 28 6.4
Z48245-1|CAA88290.1| 356|Caenorhabditis elegans Hypothetical pr... 28 8.4
L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical pr... 28 8.4
>L23646-2|AAK67235.1| 304|Caenorhabditis elegans Hypothetical
protein F44E2.10 protein.
Length = 304
Score = 145 bits (351), Expect = 4e-35
Identities = 75/192 (39%), Positives = 107/192 (55%), Gaps = 1/192 (0%)
Frame = +1
Query: 193 LIRIFISLLCVIKTATGLGEIIYAINAGGPAHTDIYGIHYEKDPLQGRIGTASDYGKQLV 372
LI I ++ KT ++ A+N GGP YGI Y D + G +SD+G Q
Sbjct: 23 LISFLIVVVSSAKTVNLKNRVVAAVNCGGPDALGAYGIEYSADTSED--GVSSDHGMQY- 79
Query: 373 MIGRVNPKDEILYQTERYHHSTFGYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNG 552
D +YQTER+ +F YD+P ++DG+YV++LKFSEVYF K+F++ +N
Sbjct: 80 SFNNAEVDDMEIYQTERWSKESFSYDVPISEDGEYVIILKFSEVYFQKAGEKIFNIRIN- 138
Query: 553 DHTIVADLDIFDKV-GRGVAHDEYIPYTIKNGKLYYNEEESDIRGGKIKVEFIKGYRDNP 729
H V +LDIFD GRG AHD YIP IK + + + + GK+ +E KG DNP
Sbjct: 139 SHLAVKNLDIFDAAGGRGFAHDVYIPVVIKGSSISVSGHSREYK-GKVIIELSKGPHDNP 197
Query: 730 KINALYVMTGTI 765
K+N ++ GT+
Sbjct: 198 KLNGYAILRGTV 209
>U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical
protein C29F5.2 protein.
Length = 252
Score = 31.1 bits (67), Expect = 0.90
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 115 RHCLIHCISVFYTFHVYLFSKLCRQN 38
+HC + C S+ Y FH Y F L R++
Sbjct: 123 QHCTLPCKSINYNFHFYSFKGLSRED 148
>U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical
protein C43H6.7 protein.
Length = 306
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 666 FFIIVEFPVLYGVRYIFIMSNTSS-YFIKNIQIGYYSMVSI 547
FFII+ + LY ++ ++ T YF+ NIQ YY +I
Sbjct: 51 FFIIIPYEQLYKPAWLLLLLGTCGLYFLFNIQYHYYKARTI 91
>U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical
protein W03B1.8 protein.
Length = 705
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = -3
Query: 735 YLWVIPISFDKFNFNFS-SPNIRFFFIIVEFPVLYGVRYIFIMSNTSSYFIKNIQIGYYS 559
Y + I+ D F +S S I+F+F+ V +IFI+S +YF + +Q GY+
Sbjct: 130 YFQQLSIAIDIFTHTWSLSVEIQFYFL---------VPFIFIIS---TYFSEILQYGYFC 177
Query: 558 MVSIQDDIKYFHVWGTE 508
+++I + + ++ TE
Sbjct: 178 VIAITSLVYFNVIFSTE 194
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +1
Query: 442 GYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAHDEY 621
G +P N G +VLVL + V S P +V + N D T++ D G V D
Sbjct: 10504 GTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGT----DSTGAFVTEDGP 10559
Query: 622 IPYTIKNGK 648
I GK
Sbjct: 10560 IIENDDEGK 10568
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +1
Query: 442 GYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAHDEY 621
G +P N G +VLVL + V S P +V + N D T++ D G V D
Sbjct: 10549 GTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGT----DSTGAFVTEDGP 10604
Query: 622 IPYTIKNGK 648
I GK
Sbjct: 10605 IIENDDEGK 10613
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +1
Query: 442 GYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAHDEY 621
G +P N G +VLVL + V S P +V + N D T++ D G V D
Sbjct: 10549 GTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGT----DSTGAFVTEDGP 10604
Query: 622 IPYTIKNGK 648
I GK
Sbjct: 10605 IIENDDEGK 10613
>Z81510-4|CAB04164.1| 839|Caenorhabditis elegans Hypothetical
protein F21D9.5 protein.
Length = 839
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = -3
Query: 213 RNKNADKSRHIVQSVIIQFTSFKPSDCMLKTSDVTV*YIVF----LYFTLFMCTCFRNYA 46
R+KN ++ R+I ++ +Q T + +D + D + V F CFR+ A
Sbjct: 488 RSKNVNRGRNIKRNDGVQATFIRLTDQSILFLDRSCFRSVLQSSCYVFHSVTSICFRSQA 547
Query: 45 GKTYRVNCNHHHR 7
G+ +R C ++R
Sbjct: 548 GRAHRERCLEYYR 560
>Z75552-6|CAA99939.1| 332|Caenorhabditis elegans Hypothetical
protein W04D2.2a protein.
Length = 332
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 738 IYLWVIPISFDKFNFNFSSPNIRFFFIIVEFPVLY 634
+YL ++ I F+K NF S I + I++F + Y
Sbjct: 46 LYLPILSIIFEKDNFKMSCFKIMYLLGIIDFMITY 80
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +2
Query: 272 PEVLLIQTSTVFIMKKIHYRDELALHQIMVNNWL*SAELILKMKYFIKL 418
P+ + + T F ++HY+ A+++ ++NN L S +++ K+ +K+
Sbjct: 739 PQKVQTKKQTNFEPLEVHYQAFSAVYKYLINNELPSLKILRKLHVLLKI 787
>AF016451-12|AAB65994.1| 317|Caenorhabditis elegans Hypothetical
protein C03A7.13 protein.
Length = 317
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 184 MSRLIRIFISLLCVIKTATGLGEIIYAINAGGPAHTD 294
M R +FI L ++ T +++ INA G +H D
Sbjct: 1 MKRTSILFILFLSLVSTLVNTSNVVFFINAIGKSHLD 37
>Z48245-1|CAA88290.1| 356|Caenorhabditis elegans Hypothetical
protein T27D1.3 protein.
Length = 356
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 691 FFLPEYQILLHYSRVSRSLWCK 626
+F+P + I + Y++V++ LWCK
Sbjct: 204 YFVPCFIITVVYTKVAKCLWCK 225
>L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical
protein R05D3.2 protein.
Length = 737
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 130 HTITRFKASKLYNNRLNNMSRLIRIFISL 216
HT+ K+SKLY + RL+++F+SL
Sbjct: 517 HTV---KSSKLYKRAIEKQGRLVKLFMSL 542
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,657,679
Number of Sequences: 27780
Number of extensions: 382081
Number of successful extensions: 1044
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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