Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a05r
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582...    29   4.6  
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114...    28   8.0  
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     28   8.0  
03_05_0801 - 27822214-27822732                                         28   8.0  

>04_04_1475 +
           33856351-33856582,33857614-33857781,33858156-33858261,
           33858391-33858442,33858525-33858642,33858736-33858766,
           33858962-33858985,33859075-33859199,33860087-33860168,
           33860319-33860441,33860539-33860592,33860669-33860738,
           33861276-33861309,33861824-33862170
          Length = 521

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 661 RR*TRQGRPSPGSRGVPVRDRPPCRGRGRFNFRHSPVQKLGT 536
           R+ + +GR     +  P   +P  RGRGR     SP QK G+
Sbjct: 466 RKPSNRGRGRGAKKATP-EPKPSARGRGRPKKTESPAQKTGS 506


>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
            33334405-33334484
          Length = 1811

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = +1

Query: 574  TDPAPDKADGRE--LGHPYFPGSDGPDASTGGRRVP--HVDSLRAGCRSTSHNEAP 729
            T  APD  DG E  +G P    SD  D  T G   P  H+D    G  + S    P
Sbjct: 1039 TPGAPDPQDGPEATVGRPLLSSSDPEDIGTEGECAPRGHLDEECPGDAAPSKEGRP 1094


>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -3

Query: 673 VHGARR*TRQGRPSPGSR---GVPVRDRP 596
           V GA R TR+GRP+   +   G P R+RP
Sbjct: 74  VEGAPRATRKGRPASDKKKEAGTPARERP 102


>03_05_0801 - 27822214-27822732
          Length = 172

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = +2

Query: 626 SRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSFGAILPMLKPLALLVEL 793
           S+A T  T  P G + L L+   LA+AA V      +  F    P+L P ALL+ L
Sbjct: 34  SQALTVATLFPLGGLLLVLSG--LALAASVVGLAVATPVFLIFSPVLVPAALLIGL 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,881,691
Number of Sequences: 37544
Number of extensions: 395150
Number of successful extensions: 1053
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)