Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17a05r
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.6  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.1  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 187 QRLIDIENIECYNNRSIY*WRQYLRA*WK 101
           +R I+I +  C   R I  W Q  R  WK
Sbjct: 36  RRRIEIAHALCLTERQIKIWFQNRRMKWK 64


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 187 QRLIDIENIECYNNRSIY*WRQYLRA*WK 101
           +R I+I +  C   R I  W Q  R  WK
Sbjct: 36  RRRIEIAHALCLTERQIKIWFQNRRMKWK 64


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 187 QRLIDIENIECYNNRSIY*WRQYLRA*WK 101
           +R I+I +  C   R I  W Q  R  WK
Sbjct: 298 RRRIEIAHALCLTERQIKIWFQNRRMKWK 326


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 204 CLNYGRVLLLDLLFC 248
           C   GR+LL+  +FC
Sbjct: 5   CSRLGRILLISAVFC 19


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 603 TVRLVGGGVGSTFVTLQFRNSARRGYHFNVQI 508
           +VRL+  G    FVT+Q +      ++ N+ I
Sbjct: 301 SVRLISSGFFDNFVTVQIQPLKNELFNANIGI 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,534
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)